Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 0.0e+00 3070.4 1706 100.0
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 0.0e+00 1477.6 1739 56.1
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 0.0e+00 1252.3 1727 49.3
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 0.0e+00 1120.9 1859 44.2
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 9.2e-267 924.9 1693 41.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 9.2e-267 924.9 1693 41.8
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 3.3e-248 863.2 1769 39.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 1.3e-244 851.3 1761 39.3
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 4.2e-243 846.3 1711 38.5
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 9.6e-240 835.1 1651 38.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 1.4e-238 831.2 1707 38.2
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 3.9e-233 813.1 1707 38.0
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 2.5e-232 810.4 1810 37.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 9.7e-232 808.5 1715 40.1
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 2.2e-228 797.3 1727 38.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 3.8e-228 796.6 1813 38.0
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.5e-224 784.6 1705 37.4
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 2.5e-224 783.9 1806 39.0
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.0e-220 769.6 1760 37.3
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.1e-219 768.5 1684 39.5
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 1.2e-218 765.0 1747 39.4
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 3.9e-217 760.0 1599 38.5
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 3.3e-216 756.9 1742 36.7
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 9.7e-216 755.4 1730 36.1
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 1.7e-215 754.6 1760 37.6
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.7e-215 754.6 1876 36.3
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.8e-215 753.8 1682 36.1
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 4.5e-213 746.5 1671 35.2
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.0e-212 745.3 1882 35.9
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 1.7e-212 744.6 1678 36.1
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.5e-208 731.5 1661 34.7
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.3e-207 728.4 1669 37.3
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.6e-205 721.5 1684 36.8
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.1e-203 715.3 1723 37.3
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.6e-202 711.4 1754 34.2
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 5.2e-201 706.4 1668 37.6
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-200 705.3 1667 34.9
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 4.4e-200 703.4 1624 36.0
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 5.3e-198 696.4 1685 36.1
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.2e-197 695.3 1674 35.4
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 3.8e-196 690.3 1623 36.0
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 6.5e-196 689.5 1814 33.2
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.9e-195 688.0 1648 34.1
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 7.2e-195 686.0 1657 37.3
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 4.0e-193 680.2 1811 34.2
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 8.8e-193 679.1 1696 36.8
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.2e-192 678.7 1746 34.8
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.6e-192 677.6 1819 36.1
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 4.4e-192 676.8 1688 34.8
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 7.5e-192 676.0 1693 33.7
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.2e-191 674.5 1725 34.7
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.1e-190 672.2 1703 34.0
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 1.4e-190 671.8 1726 34.8
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 5.9e-189 666.4 1698 35.5
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 7.7e-189 666.0 1741 33.0
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 7.2e-187 659.4 2169 32.7
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 2.1e-186 657.9 1907 35.9
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.8e-186 657.5 1681 34.9
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 1.0e-185 655.6 1741 32.1
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 2.3e-185 654.4 1729 32.9
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 2.3e-185 654.4 1671 34.0
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-184 651.4 1798 33.1
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.8e-182 644.8 1758 32.7
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 9.2e-182 642.5 1744 33.0
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 5.9e-181 639.8 1645 34.1
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.0e-180 639.0 1739 33.4
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 2.6e-176 624.4 1632 34.4
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-175 621.7 1720 33.9
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.4e-174 618.6 1627 34.2
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.2e-168 599.0 1619 32.8
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.6e-165 588.6 1674 34.1
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.7e-162 577.0 1686 32.6
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.1e-161 575.9 1841 35.0
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 3.9e-156 557.4 1034 39.7
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.9e-155 555.1 1607 32.9
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 4.7e-154 550.4 965 39.6
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 3.8e-151 540.8 1027 38.4
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 8.4e-151 539.7 1556 32.8
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 6.2e-146 523.5 769 44.0
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.2e-141 509.2 1595 30.1
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 4.8e-138 497.3 856 47.3
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 5.3e-137 493.8 923 36.8
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.9e-131 475.3 1442 33.8
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 2.2e-127 461.8 1748 29.7
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.3e-124 451.8 1637 29.6
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.5e-117 427.9 1376 32.6
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.5e-117 427.9 1376 32.6
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 6.7e-116 423.7 1409 30.7
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.8e-111 407.9 978 37.9
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 4.2e-110 404.4 882 34.8
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.8e-106 391.0 545 40.9
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.3e-98 364.0 889 36.6
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 7.2e-94 350.5 595 39.7
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 2.3e-92 345.5 574 40.8
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.6e-85 322.8 436 39.9
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 6.7e-84 317.4 897 37.7
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.3e-83 315.1 865 34.1
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 2.1e-77 295.8 1193 26.9
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 2.6e-75 288.9 813 35.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 3.8e-71 275.0 888 29.6
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.5e-67 263.1 907 35.5
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 8.6e-63 247.3 1638 24.7
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.5e-59 236.5 1307 26.5
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.4e-57 229.9 1051 25.1
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 5.4e-57 228.0 447 40.7
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.6e-53 215.3 471 31.4
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 7.1e-49 201.1 233 46.8
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.3e-47 196.8 221 50.2
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.1e-46 193.7 236 45.8
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.1e-46 193.7 196 53.1
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.5e-46 193.4 247 45.3
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 8.1e-45 187.6 193 48.7
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 3.4e-43 182.2 185 49.7
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 7.3e-38 164.5 641 30.4
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 6.2e-37 161.4 148 63.5
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 6.2e-37 161.4 187 49.2
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 1.8e-36 159.8 645 34.3
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.8e-36 159.8 167 55.7
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 9.9e-35 154.1 740 33.5
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 6.4e-34 151.4 456 32.2
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.8e-29 136.0 232 40.9
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 4.0e-28 132.1 276 38.8
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 9.0e-28 131.0 95 63.2
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.5e-27 130.2 1006 27.3
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 4.4e-27 128.6 112 67.0
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.1e-25 124.0 135 54.8
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 5.4e-25 121.7 370 40.8
SalBow3G1183 Salvia bowleyana HOM05D004493 ORTHO05D005117 3.5e-24 119.0 131 54.2
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.6e-24 118.6 146 41.8
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 7.8e-24 117.9 764 31.0
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.5e-22 112.8 657 28.8
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.8e-21 109.4 235 34.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 7.6e-19 101.3 139 40.3
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 1.0e-15 90.9 537 22.9
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 1.9e-14 86.7 93 51.6
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.1e-13 83.2 179 30.2
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 4.5e-11 75.5 78 46.2
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 1.7e-10 73.6 284 29.9
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.5e-10 71.6 79 41.8
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.2e-09 69.3 217 26.3
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.5e-09 68.6 110 33.6
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.6e-08 67.0 66 45.5
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.6e-08 65.5 62 46.8
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 2.3e-07 63.2 417 23.3
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-06 60.8 59 47.5


User provided reference genes

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