Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 6.0e-291 1003.4 504 100.0
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.7e-43 181.4 633 31.1
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 6.5e-35 152.9 645 28.2
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.5e-34 151.0 631 28.5
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.2e-33 148.7 630 28.6
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 3.9e-32 143.7 376 31.9
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 6.3e-30 136.3 420 31.2
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 5.3e-29 133.3 372 31.7
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.2e-28 132.1 430 29.1
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 4.5e-28 130.2 483 30.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 5.9e-28 129.8 491 27.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.0e-27 129.0 418 32.5
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.7e-27 128.3 433 29.8
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.9e-27 127.5 475 27.6
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 5.0e-27 126.7 436 28.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 6.5e-27 126.3 481 29.1
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.9e-26 124.8 366 31.4
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 2.5e-26 124.4 422 29.6
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 3.2e-26 124.0 148 54.1
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 4.2e-26 123.6 148 54.7
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 4.2e-26 123.6 378 31.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 4.2e-26 123.6 423 29.8
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 5.5e-26 123.2 441 28.3
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 5.5e-26 123.2 433 29.6
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 7.2e-26 122.9 477 30.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 9.4e-26 122.5 481 28.9
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 9.4e-26 122.5 480 28.8
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.6e-25 121.7 422 29.9
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.6e-25 121.7 148 50.7
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.6e-25 121.7 479 29.2
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.7e-25 120.9 387 29.7
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.6e-25 120.6 148 48.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.7e-25 120.2 148 54.1
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 4.7e-25 120.2 148 54.1
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 4.7e-25 120.2 479 28.8
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.1e-25 119.8 130 55.4
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 6.1e-25 119.8 148 52.7
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 8.0e-25 119.4 129 57.4
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 8.0e-25 119.4 92 68.5
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.0e-25 119.4 148 54.1
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 8.0e-25 119.4 423 29.8
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.4e-24 118.6 148 50.7
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.4e-24 118.6 148 50.7
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 1.4e-24 118.6 148 52.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.4e-24 118.6 423 29.3
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.4e-24 118.6 148 52.7
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.8e-24 118.2 468 27.8
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.3e-24 117.9 148 51.4
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 2.3e-24 117.9 95 66.3
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.0e-24 117.5 92 70.7
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 3.0e-24 117.5 502 27.9
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 3.0e-24 117.5 218 40.8
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.0e-24 117.1 424 29.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 5.2e-24 116.7 148 50.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 6.7e-24 116.3 162 47.5
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 6.7e-24 116.3 378 28.8
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 8.8e-24 115.9 90 68.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.5e-23 115.2 148 50.7
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 2.0e-23 114.8 162 46.9
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.0e-23 114.8 97 64.9
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.4e-23 113.6 92 65.2
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 7.5e-23 112.8 92 67.4
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 7.5e-23 112.8 148 50.0
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 9.7e-23 112.5 431 27.8
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.3e-22 112.1 92 63.0
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.3e-22 112.1 148 51.4
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.3e-22 112.1 148 50.0
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.7e-22 111.7 153 48.4
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.7e-22 111.7 153 48.4
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.7e-22 111.7 153 48.4
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.2e-22 111.3 148 50.7
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 2.2e-22 111.3 148 49.3
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.8e-22 110.9 98 63.3
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 3.7e-22 110.5 92 66.3
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 4.8e-22 110.2 92 67.4
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 4.8e-22 110.2 148 48.6
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 6.3e-22 109.8 95 65.3
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.8e-21 108.2 92 63.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.8e-21 108.2 148 48.0
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.8e-21 108.2 97 62.9
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 3.1e-21 107.5 92 63.0
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.1e-21 107.5 148 48.6
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.1e-21 107.1 97 58.8
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 4.1e-21 107.1 97 58.8
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 4.1e-21 107.1 135 48.1
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 5.3e-21 106.7 298 32.2
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 5.3e-21 106.7 92 60.9
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 5.3e-21 106.7 129 52.7
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.2e-20 105.5 92 64.1
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.6e-20 105.1 92 60.9
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.2e-19 101.3 186 39.8
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.8e-19 100.5 122 52.5
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.8e-19 100.5 122 52.5
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 3.8e-19 100.5 84 64.3
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.0e-19 100.1 93 58.1
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.2e-18 97.4 90 60.0
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.2e-17 95.5 92 55.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 6.1e-17 93.2 129 47.3
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.0e-15 88.2 83 61.4
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.6e-15 87.8 92 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.8e-14 84.3 92 48.9
SGA_v2.0_scaffold6G03241 Striga asiatica HOM05D000066 ORTHO05D403046 3.7e-14 84.0 62 74.2
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.4e-13 81.3 55 74.5
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.0e-12 78.2 82 52.4
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-12 77.4 95 45.3
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.1e-10 72.4 49 67.3
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.1e-09 68.2 195 27.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.0e-08 64.3 46 63.0
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 6.8e-08 63.2 97 38.1
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 4.4e-07 60.5 48 62.5
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 7.5e-07 59.7 100 41.0
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 2.8e-06 57.8 99 40.4
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.8e-06 57.8 90 38.9


User provided reference genes

Program Settings