Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 2.3e-131 472.2 239 100.0
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 3.5e-55 219.2 156 75.0
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 1.7e-49 200.3 155 69.0
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 1.7e-46 190.3 160 68.1
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 8.7e-46 188.0 158 65.2
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 8.7e-46 188.0 158 65.2
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 1.5e-45 187.2 155 65.2
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 1.9e-45 186.8 155 65.8
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 8.1e-44 181.4 156 66.0
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 1.1e-43 181.0 155 61.9
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 3.1e-43 179.5 167 61.7
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 9.0e-43 177.9 154 66.2
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.5e-42 177.2 154 66.9
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 4.4e-42 175.6 167 58.1
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 5.8e-42 175.3 154 65.6
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 1.3e-41 174.1 154 66.2
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 4.9e-41 172.2 155 63.9
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 4.9e-41 172.2 163 62.6
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 1.4e-40 170.6 155 61.3
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 5.4e-40 168.7 149 63.1
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 5.4e-40 168.7 149 63.1
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 7.1e-40 168.3 150 62.7
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 9.3e-40 167.9 149 63.1
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 1.6e-39 167.2 154 60.4
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 2.7e-39 166.4 155 63.9
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 2.7e-39 166.4 160 61.9
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 3.5e-39 166.0 150 62.0
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 4.6e-39 165.6 164 57.9
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 4.6e-39 165.6 151 60.9
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 4.6e-39 165.6 148 62.8
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 7.8e-39 164.9 159 59.1
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 7.8e-39 164.9 155 60.0
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 1.0e-38 164.5 143 65.7
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 1.0e-38 164.5 157 60.5
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.3e-38 164.1 155 62.6
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 2.3e-38 163.3 160 61.2
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 3.0e-38 162.9 149 60.4
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 3.9e-38 162.5 153 60.8
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 3.9e-38 162.5 149 61.7
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 5.1e-38 162.2 155 60.0
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 5.1e-38 162.2 149 60.4
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 6.6e-38 161.8 149 61.1
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 8.7e-38 161.4 149 60.4
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 1.1e-37 161.0 156 60.3
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 1.5e-37 160.6 154 59.1
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 1.9e-37 160.2 142 59.9
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 2.5e-37 159.8 154 59.7
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 2.5e-37 159.8 156 56.4
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 2.5e-37 159.8 149 60.4
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 3.3e-37 159.5 145 65.5
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 5.6e-37 158.7 140 62.1
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 5.6e-37 158.7 146 63.0
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 5.6e-37 158.7 155 55.5
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 7.3e-37 158.3 155 56.1
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.3e-36 157.5 158 58.2
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 2.1e-36 156.8 148 60.8
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 2.1e-36 156.8 168 56.0
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 2.1e-36 156.8 102 76.5
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 3.6e-36 156.0 149 61.1
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 4.8e-36 155.6 158 58.9
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 4.8e-36 155.6 142 61.3
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 6.2e-36 155.2 155 59.4
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 1.4e-35 154.1 155 58.7
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 2.4e-35 153.3 119 68.1
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.4e-35 153.3 162 56.2
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.4e-35 153.3 155 58.7
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 2.4e-35 153.3 140 60.7
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 5.3e-35 152.1 167 55.7
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 5.3e-35 152.1 155 59.4
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 5.3e-35 152.1 155 58.7
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 5.3e-35 152.1 163 57.1
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 6.9e-35 151.8 156 59.0
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 6.9e-35 151.8 127 63.0
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.5e-34 150.6 145 59.3
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 3.4e-34 149.4 160 56.2
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 3.4e-34 149.4 159 56.0
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 3.4e-34 149.4 143 58.7
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 4.5e-34 149.1 102 71.6
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 4.5e-34 149.1 142 59.2
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 5.8e-34 148.7 155 58.1
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.3e-33 147.5 163 57.1
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 1.7e-33 147.1 155 56.1
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 2.9e-33 146.4 140 61.4
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 3.8e-33 146.0 142 56.3
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 4.9e-33 145.6 99 72.7
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 1.1e-32 144.4 101 71.3
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 1.1e-32 144.4 142 57.0
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 1.9e-32 143.7 150 57.3
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 2.4e-32 143.3 100 73.0
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 2.4e-32 143.3 141 61.0
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 3.2e-32 142.9 150 55.3
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 3.2e-32 142.9 150 56.0
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 3.2e-32 142.9 98 71.4
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 3.2e-32 142.9 101 73.3
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 4.2e-32 142.5 144 57.6
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 5.4e-32 142.1 139 57.6
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 9.3e-32 141.4 150 55.3
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 1.2e-31 141.0 144 56.9
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 1.6e-31 140.6 150 54.7
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 1.6e-31 140.6 144 56.9
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 1.6e-31 140.6 150 54.7
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 3.5e-31 139.4 141 55.3
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.0e-30 137.9 142 57.0
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.0e-30 137.9 142 57.0
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 1.3e-30 137.5 100 72.0
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.8e-30 137.1 100 69.0
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 5.6e-29 132.1 102 65.7
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 7.4e-29 131.7 100 69.0
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 9.0e-27 124.8 100 68.0
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 2.0e-26 123.6 135 51.9
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 3.8e-25 119.4 100 62.0
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.1e-24 117.9 100 63.0
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.1e-24 117.9 124 54.8
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 5.5e-24 115.5 106 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 2.3e-22 110.2 142 46.5
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 3.9e-22 109.4 120 49.2
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 6.7e-22 108.6 97 61.9
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 3.3e-21 106.3 104 54.8
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 1.4e-19 100.9 102 50.0
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 1.8e-19 100.5 139 44.6
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 1.9e-16 90.5 153 42.5
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 3.2e-16 89.7 68 66.2
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.6e-15 87.4 103 47.6
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 3.5e-15 86.3 70 57.1
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 3.0e-14 83.2 102 46.1
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 7.4e-13 78.6 88 48.9
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.4e-11 74.3 62 64.5
PRCOL_00005962 Prasinoderma coloniale HOM05D006064 ORTHO05D007619 2.2e-09 67.0 88 40.9
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 3.2e-08 63.2 98 37.8
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 5.5e-08 62.4 103 36.9
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 5.5e-08 62.4 57 61.4
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 9.4e-08 61.6 72 43.1
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 1.2e-07 61.2 72 41.7
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.4e-06 57.8 140 33.6
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.8e-06 57.4 72 43.1
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 1.8e-06 57.4 105 35.2
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.8e-06 57.4 105 35.2
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.8e-06 57.4 105 35.2
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 2.3e-06 57.0 72 41.7
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 2.3e-06 57.0 72 41.7
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.9e-06 56.2 105 35.2
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.9e-06 56.2 105 35.2
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 3.9e-06 56.2 72 41.7
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 5.1e-06 55.8 72 41.7
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 5.1e-06 55.8 72 40.3


User provided reference genes

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