Gene: AT1G79850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G79850
  • Transcript Identifier AT1G79850.1
  • Gene Type Coding gene
  • Location Chr1 : 30041473-30041922 : negative

Gene Family Information

  • ID HOM05D006064
  • #Genes/#Species 130/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G79850.1
  • symbol RPS17
  • Alias CS17,PDE347,PIGMENT DEFECTIVE 347,PRPS17,PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17
  • uniprot P16180

Descriptions

  • Description ribosomal protein S17
  • Computational description ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
TAS
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0032544
IMP
Gene Ontologyplastid translation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome2
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 4
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0009536
IEA
GOA Databaseplastid
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid5
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope6
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma7
GO:0005739
HDA
IBA
Gene Ontologymitochondrion2 8
GO:0000312
ISS
Gene Ontologyplastid small ribosomal subunit9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000266 Ribosomal protein S17/S11
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
17.7.2.2.17 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS17