Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 3.0e-196 688.3 352 100.0
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 8.8e-172 607.1 352 85.5
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 5.3e-169 597.8 352 87.5
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 3.8e-167 591.7 349 83.1
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 8.5e-167 590.5 347 83.3
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.9e-160 567.8 329 82.7
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.1e-158 563.5 327 82.0
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 5.5e-158 561.2 350 80.3
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 9.4e-158 560.5 353 76.5
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 6.1e-157 557.8 329 81.8
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 3.0e-156 555.4 325 80.6
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.5e-155 553.1 349 76.8
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 1.5e-155 553.1 325 80.3
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 2.0e-155 552.7 350 77.7
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 2.0e-155 552.7 331 81.3
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.6e-155 552.4 350 77.7
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 3.4e-155 552.0 329 80.5
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 7.5e-155 550.8 320 82.2
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 7.5e-155 550.8 350 77.4
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 9.8e-155 550.4 326 81.0
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 3.7e-154 548.5 323 81.1
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 1.1e-153 547.0 350 80.0
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.1e-153 547.0 323 81.7
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.8e-153 546.2 348 76.1
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.8e-153 546.2 323 81.7
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 1.8e-153 546.2 327 80.1
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 3.1e-153 545.4 329 80.9
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 5.4e-153 544.7 333 79.0
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.6e-152 543.1 356 75.6
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.5e-152 542.0 327 80.7
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 5.9e-152 541.2 328 79.3
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 7.7e-152 540.8 326 80.7
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 7.7e-152 540.8 351 78.6
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.0e-151 540.4 323 81.7
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.0e-151 540.4 328 79.9
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.3e-151 540.0 318 80.5
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.9e-151 538.9 325 80.3
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.8e-151 538.5 326 79.4
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 3.8e-151 538.5 325 78.8
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 1.1e-150 537.0 322 80.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 1.1e-150 537.0 324 80.9
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.1e-150 537.0 324 80.9
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.9e-150 536.2 322 82.0
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 2.5e-150 535.8 322 81.1
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.3e-150 535.4 322 80.1
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 3.3e-150 535.4 322 80.1
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 3.3e-150 535.4 349 75.1
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 5.6e-150 534.6 326 79.4
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 7.2e-150 534.3 325 77.5
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 7.2e-150 534.3 322 81.1
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 9.5e-150 533.9 324 80.9
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.2e-149 533.5 322 81.4
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.2e-149 533.5 324 80.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 1.6e-149 533.1 322 78.9
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.6e-149 531.9 348 75.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 4.7e-149 531.6 325 80.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 4.7e-149 531.6 325 80.0
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 8.0e-149 530.8 324 80.2
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.0e-148 530.4 326 78.5
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.0e-148 530.4 327 78.3
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.4e-148 530.0 318 79.9
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.4e-148 530.0 345 74.5
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.3e-148 529.3 327 78.3
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 4.0e-148 528.5 324 80.2
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 4.0e-148 528.5 332 76.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.2e-148 528.1 329 77.8
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 8.9e-148 527.3 334 76.9
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.5e-147 526.6 329 77.8
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 2.9e-146 522.3 322 77.0
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 4.9e-146 521.5 323 78.0
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.8e-145 519.6 329 76.3
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 5.4e-145 518.1 329 76.6
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 5.4e-145 518.1 347 72.6
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 9.2e-145 517.3 328 77.4
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 9.2e-145 517.3 348 72.7
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 9.2e-145 517.3 327 75.5
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 1.6e-144 516.5 329 76.3
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 3.5e-144 515.4 328 76.5
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 4.6e-144 515.0 328 76.2
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.9e-143 512.3 329 76.0
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 6.6e-143 511.1 332 75.6
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.3e-142 508.4 322 76.7
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 4.3e-142 508.4 326 76.7
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 5.6e-142 508.1 324 76.2
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 9.5e-142 507.3 326 76.4
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 2.8e-141 505.8 326 75.8
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 4.7e-141 505.0 322 76.4
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.8e-140 503.1 321 74.5
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 5.2e-140 501.5 351 74.4
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.5e-139 500.0 345 72.8
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.4e-139 498.8 290 82.4
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 1.1e-137 493.8 364 73.9
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 9.2e-137 490.7 300 79.0
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.2e-136 490.3 290 82.8
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.0e-135 487.3 353 68.6
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.6e-133 479.9 328 72.0
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 4.0e-132 475.3 289 79.6
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 1.5e-131 473.4 307 75.9
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 1.9e-129 466.5 320 74.4
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.9e-129 466.5 291 78.0
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 7.3e-126 454.5 255 83.9
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.8e-125 452.6 259 83.8
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.4e-124 450.3 259 83.4
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.4e-121 440.3 257 81.3
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 1.9e-121 439.9 356 62.9
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 3.9e-119 432.2 273 76.9
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.9e-114 416.0 259 77.2
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 2.4e-108 396.4 332 59.9
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 9.0e-108 394.4 325 60.6
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 8.4e-106 387.9 229 79.9
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.1e-104 383.3 227 81.5
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 4.6e-104 382.1 324 60.2
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.4e-84 317.4 298 56.0
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 7.6e-83 311.6 167 89.2
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.5e-75 287.3 213 64.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.6e-75 286.6 275 57.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.8e-74 282.7 176 76.7
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.0e-62 243.8 145 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 3.7e-61 239.6 212 58.0
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 8.5e-58 228.4 206 59.7
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 2.7e-51 206.8 312 37.5
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.5e-49 200.3 245 45.7
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 4.7e-48 196.1 195 54.9
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.3e-47 193.7 316 41.5
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 6.3e-45 185.7 346 34.4
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 4.4e-38 162.9 114 71.1
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 5.7e-38 162.5 106 71.7
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 2.8e-37 160.2 234 45.7
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 5.9e-35 152.5 311 35.0
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.3e-21 108.2 57 89.5
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.5e-17 94.7 250 32.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.5e-17 94.0 98 53.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.2e-14 85.1 45 82.2
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 1.9e-12 77.8 78 52.6
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 1.6e-11 74.7 55 65.5
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 4.7e-08 63.2 30 83.3
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 4.4e-06 56.6 85 48.2
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 9.9e-06 55.5 39 74.4


User provided reference genes

Program Settings