Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G22949 Striga asiatica HOM05D001678 ORTHO05D001698 2.3e-114 415.6 211 100.0
SGA_v2.0_scaffold296G47542 Striga asiatica HOM05D001678 ORTHO05D001698 2.8e-72 275.8 223 70.0
SGA_v2.0_scaffold46G17365 Striga asiatica HOM05D001678 ORTHO05D001698 7.6e-70 267.7 212 71.2
SGA_v2.0_scaffold3280G54305 Striga asiatica HOM05D001678 ORTHO05D001698 1.7e-53 213.4 264 51.9
SGA_v2.0_scaffold414G51212 Striga asiatica HOM05D001678 ORTHO05D001698 2.5e-52 209.5 177 66.1
Oeu029512.1 Olea europaea HOM05D001678 ORTHO05D001698 3.0e-42 176.0 190 50.5
Oeu035952.1 Olea europaea HOM05D001678 ORTHO05D001698 8.7e-42 174.5 191 50.8
SGA_v2.0_scaffold27G11443 Striga asiatica HOM05D001678 ORTHO05D001698 2.1e-35 153.3 194 48.5
SGA_v2.0_scaffold68G22889 Striga asiatica HOM05D001678 ORTHO05D001698 2.1e-35 153.3 194 48.5
SGA_v2.0_scaffold25G11062 Striga asiatica HOM05D001678 ORTHO05D001698 2.7e-35 152.9 195 48.2
SGA_v2.0_scaffold2614G54162 Striga asiatica HOM05D001678 ORTHO05D001698 1.4e-34 150.6 194 48.5
Oeu004532.1 Olea europaea HOM05D001678 ORTHO05D001698 1.1e-31 141.0 267 38.6
Oeu043769.1 Olea europaea HOM05D001574 ORTHO05D001698 4.1e-31 139.0 159 50.3
Oeu061131.1 Olea europaea HOM05D001678 ORTHO05D001698 2.2e-29 133.3 176 45.5
SGA_v2.0_scaffold177G39408 Striga asiatica HOM05D001678 ORTHO05D001698 2.5e-28 129.8 183 43.2
SGA_v2.0_scaffold1090G53835 Striga asiatica HOM05D001678 ORTHO05D001698 3.2e-28 129.4 183 45.4
Atru.chr6.779 Acer truncatum HOM05D001678 ORTHO05D001698 2.0e-25 120.2 200 39.5
SGA_v2.0_scaffold180G39663 Striga asiatica HOM05D001678 ORTHO05D001698 4.4e-25 119.0 95 66.3
SGA_v2.0_scaffold97G29236 Striga asiatica HOM05D001678 ORTHO05D001698 1.8e-23 113.6 98 63.3
Prupe.4G168300 Prunus persica HOM05D001678 ORTHO05D001698 2.6e-22 109.8 209 35.9
Lj6A398T11 Lonicera japonica HOM05D001678 ORTHO05D001698 2.9e-21 106.3 245 31.8
Prupe.1G170700 Prunus persica HOM05D001678 ORTHO05D001698 1.1e-20 104.4 206 35.4
Oeu048642.1 Olea europaea HOM05D001678 ORTHO05D001698 2.5e-20 103.2 116 48.3
RcHm_v2.0_Chr6g0281401 Rosa chinensis HOM05D001678 ORTHO05D001698 3.2e-20 102.8 201 36.3
Lj3C1037T5 Lonicera japonica HOM05D001678 ORTHO05D001698 1.0e-18 97.8 198 33.8
SGA_v2.0_scaffold172G38953 Striga asiatica HOM05D000077 ORTHO05D005617 1.8e-18 97.1 151 45.7
FAN08G3647 Fragaria x ananassa HOM05D001678 ORTHO05D001698 3.0e-18 96.3 207 33.3
FvH4_4g17330 Fragaria vesca HOM05D001678 ORTHO05D001698 2.6e-17 93.2 198 32.8
RcHm_v2.0_Chr3g0476481 Rosa chinensis HOM05D001678 ORTHO05D001698 7.5e-17 91.7 209 31.6
FvH4_2g33311 Fragaria vesca HOM05D001678 ORTHO05D001698 1.3e-16 90.9 203 33.0
FvH4_6g24700 Fragaria vesca HOM05D001678 ORTHO05D001698 1.7e-16 90.5 276 29.0
Prupe.6G133700 Prunus persica HOM05D001678 ORTHO05D001698 2.8e-16 89.7 205 32.2
Prupe.3G105400 Prunus persica HOM05D001678 ORTHO05D001698 4.8e-16 89.0 239 28.9
FAN10G0526 Fragaria x ananassa HOM05D001678 ORTHO05D001698 8.2e-16 88.2 204 32.4
FAN24G2506 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.1e-15 87.8 201 31.3
Prupe.8G061600 Prunus persica HOM05D001678 ORTHO05D001698 1.1e-15 87.8 187 29.4
RcHm_v2.0_Chr4g0409291 Rosa chinensis HOM05D001678 ORTHO05D001698 1.1e-15 87.8 201 34.3
FAN12G1326 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.4e-15 87.4 202 31.2
Oeu059447.1 Olea europaea HOM05D001678 ORTHO05D001698 1.4e-15 87.4 73 61.6
Lj2A433T12 Lonicera japonica HOM05D001678 ORTHO05D001698 1.8e-15 87.0 214 34.6
Atru.chr13.2422 Acer truncatum HOM05D001678 ORTHO05D001698 3.1e-15 86.3 248 29.8
DCAR_017789 Daucus carota HOM05D001678 ORTHO05D001698 3.1e-15 86.3 167 31.7
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 5.3e-15 85.5 221 31.7
SalBow1G8139 Salvia bowleyana HOM05D001678 ORTHO05D001698 7.0e-15 85.1 208 33.2
FAN14G3339 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.6e-14 84.0 207 29.5
Prupe.7G010100 Prunus persica HOM05D001678 ORTHO05D001698 1.6e-14 84.0 236 31.8
Glyma.11G167500 Glycine max HOM05D001678 ORTHO05D001698 2.6e-14 83.2 247 30.0
Oeu015820.2 Olea europaea HOM05D001678 ORTHO05D001698 2.6e-14 83.2 98 51.0
Oeu041480.1 Olea europaea HOM05D001678 ORTHO05D001698 2.6e-14 83.2 92 48.9
Glyma.18G175000 Glycine max HOM05D001678 ORTHO05D001698 5.9e-14 82.0 247 29.1
Glyma.20G169100 Glycine max HOM05D001678 ORTHO05D001698 1.0e-13 81.3 247 29.6
FAN23G0320 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.3e-13 80.9 192 31.2
Glyma.14G219200 Glycine max HOM05D001678 ORTHO05D001698 1.3e-13 80.9 249 28.9
Glyma.17G190600 Glycine max HOM05D001678 ORTHO05D001698 1.7e-13 80.5 251 29.1
DCAR_007692 Daucus carota HOM05D001678 ORTHO05D001698 2.2e-13 80.1 167 30.5
DCAR_005360 Daucus carota HOM05D001678 ORTHO05D001698 2.9e-13 79.7 184 30.4
FvH4_6g20420 Fragaria vesca HOM05D000034 ORTHO05D001698 2.9e-13 79.7 202 29.2
Glyma.01G110000 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 248 29.0
Glyma.01G126100 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 248 29.0
Glyma.06G182400 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 248 29.0
Glyma.07G133600 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 239 28.9
Glyma.10G293700 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 248 29.0
Glyma.12G113000 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 248 29.0
Glyma.19G032300 Glycine max HOM05D001678 ORTHO05D001698 2.9e-13 79.7 248 29.0
Prupe.1G229800 Prunus persica HOM05D001678 ORTHO05D001698 2.9e-13 79.7 208 30.8
Glyma.06G095100 Glycine max HOM05D001678 ORTHO05D001698 6.5e-13 78.6 248 29.0
Glyma.13G184400 Glycine max HOM05D001678 ORTHO05D001698 6.5e-13 78.6 248 28.6
Glyma.10G131100 Glycine max HOM05D001678 ORTHO05D001698 8.5e-13 78.2 241 28.6
Glyma.10G200900 Glycine max HOM05D001678 ORTHO05D001698 8.5e-13 78.2 250 28.4
Atru.chr12.2214 Acer truncatum HOM05D001678 ORTHO05D001698 1.1e-12 77.8 222 25.7
Glyma.15G150600 Glycine max HOM05D001678 ORTHO05D001698 1.5e-12 77.4 248 28.6
Glyma.10G211500 Glycine max HOM05D001678 ORTHO05D001698 3.2e-12 76.3 247 28.7
DCAR_002869 Daucus carota HOM05D001678 ORTHO05D001698 4.2e-12 75.9 190 31.6
MD03G1206200 Malus domestica HOM05D001678 ORTHO05D001698 4.2e-12 75.9 225 29.8
Oeu039328.1 Olea europaea HOM05D001678 ORTHO05D001698 4.2e-12 75.9 188 31.4
Prupe.6G020000 Prunus persica HOM05D001678 ORTHO05D001698 4.2e-12 75.9 233 28.8
Glyma.08G218300 Glycine max HOM05D001678 ORTHO05D001698 5.5e-12 75.5 248 28.2
Glyma.14G191800 Glycine max HOM05D001678 ORTHO05D001698 5.5e-12 75.5 237 29.1
Atru.chr6.809 Acer truncatum HOM05D001678 ORTHO05D001698 9.4e-12 74.7 139 37.4
FAN09G4289 Fragaria x ananassa HOM05D001678 ORTHO05D001698 9.4e-12 74.7 188 31.9
Medtr1g106600 Medicago truncatula HOM05D001678 ORTHO05D001698 9.4e-12 74.7 243 27.2
Medtr1g106608 Medicago truncatula HOM05D001678 ORTHO05D001698 9.4e-12 74.7 243 27.2
Medtr6g018520 Medicago truncatula HOM05D001678 ORTHO05D001698 9.4e-12 74.7 243 27.2
Medtr6g025650 Medicago truncatula HOM05D001678 ORTHO05D001698 9.4e-12 74.7 243 27.2
FAN12G3116 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.2e-11 74.3 182 30.8
Prupe.4G156100 Prunus persica HOM05D001678 ORTHO05D001698 1.2e-11 74.3 219 29.2
FvH4_5g24690 Fragaria vesca HOM05D001678 ORTHO05D001698 1.6e-11 73.9 240 29.2
FAN13G1605 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.6e-11 73.9 196 29.6
FAN08G2072 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.7e-11 72.4 187 34.2
Atru.chr7.11 Acer truncatum HOM05D000034 ORTHO05D000037 6.1e-11 72.0 212 26.9
Glyma.08G208800 Glycine max HOM05D001678 ORTHO05D001698 1.0e-10 71.2 201 29.9
SGA_v2.0_scaffold612G53189 Striga asiatica HOM05D001678 ORTHO05D001698 1.0e-10 71.2 137 40.9
Atru.chr2.1398 Acer truncatum HOM05D001678 ORTHO05D001698 1.4e-10 70.9 215 30.7
FAN02G2409 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.4e-10 70.9 200 29.5
Glyma.05G193100 Glycine max HOM05D001678 ORTHO05D001698 2.3e-10 70.1 242 28.5
Glyma.01G111800 Glycine max HOM05D001678 ORTHO05D001698 3.0e-10 69.7 237 28.7
FAN23G1752 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.0e-10 69.3 189 31.2
Atru.chr2.502 Acer truncatum HOM05D001678 ORTHO05D001698 8.8e-10 68.2 138 35.5
Glyma.17G148300 Glycine max HOM05D001678 ORTHO05D001698 1.5e-09 67.4 234 29.5
Lj1A169T8 Lonicera japonica HOM05D001678 ORTHO05D001698 2.0e-09 67.0 175 32.6
SalBow3G4530 Salvia bowleyana HOM05D001678 ORTHO05D001698 2.6e-09 66.6 192 29.7
DCAR_003999 Daucus carota HOM05D001678 ORTHO05D001698 3.4e-09 66.2 184 28.3
A01p29830 Brassica napus HOM05D001678 ORTHO05D001698 7.5e-09 65.1 201 27.9
BraA01t03111Z Brassica rapa HOM05D001678 ORTHO05D001698 7.5e-09 65.1 201 27.9
Oeu051357.1 Olea europaea HOM05D001678 ORTHO05D001698 7.5e-09 65.1 140 33.6
TPR.G8361 Trifolium pratense HOM05D001678 ORTHO05D001698 7.5e-09 65.1 208 30.8
MD06G1083900 Malus domestica HOM05D001678 ORTHO05D001698 9.8e-09 64.7 216 29.2
Prupe.2G168600 Prunus persica HOM05D001678 ORTHO05D001698 1.7e-08 63.9 230 28.7
SalBow8G3237 Salvia bowleyana HOM05D001678 ORTHO05D001698 2.2e-08 63.5 182 28.6
Glyma.10G128600 Glycine max HOM05D001678 ORTHO05D001698 2.8e-08 63.2 213 28.6
FvH4_2g00551 Fragaria vesca HOM05D001678 ORTHO05D001698 3.7e-08 62.8 186 26.9
Glyma.04G175200 Glycine max HOM05D001678 ORTHO05D001698 3.7e-08 62.8 231 28.1
Lj4C317T2 Lonicera japonica HOM05D000034 ORTHO05D001698 3.7e-08 62.8 99 45.5
FAN03G1731 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.8e-08 62.4 182 29.1
RcHm_v2.0_Chr4g0395221 Rosa chinensis HOM05D001678 ORTHO05D001698 4.8e-08 62.4 105 35.2
BcaC07g37804 Brassica carinata HOM05D001678 ORTHO05D001698 6.3e-08 62.0 222 27.5
BolC8t48193H Brassica oleracea HOM05D001678 ORTHO05D001698 6.3e-08 62.0 222 27.5
Glyma.14G095600 Glycine max HOM05D001678 ORTHO05D001698 6.3e-08 62.0 233 28.3
PSO339G1554 Papaver somniferum HOM05D031727 ORTHO05D037278 6.3e-08 62.0 222 23.9
Glyma.01G021800 Glycine max HOM05D001678 ORTHO05D001698 1.1e-07 61.2 224 27.2
Lj3C974T6 Lonicera japonica HOM05D000034 ORTHO05D001698 1.1e-07 61.2 99 44.4
PSO675G0396 Papaver somniferum HOM05D031727 ORTHO05D037278 1.1e-07 61.2 223 24.2
Carub.0007s0094 Capsella rubella HOM05D001678 ORTHO05D001698 1.8e-07 60.5 196 27.6
C02p32520 Brassica napus HOM05D001678 ORTHO05D001698 2.4e-07 60.1 201 26.9
Oeu041525.1 Olea europaea HOM05D001678 ORTHO05D001698 2.4e-07 60.1 50 62.0
RcHm_v2.0_Chr5g0008231 Rosa chinensis HOM05D001678 ORTHO05D001698 4.1e-07 59.3 94 34.0
FAN04G1238 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.4e-07 58.9 173 28.3
RcHm_v2.0_Chr6g0297421 Rosa chinensis HOM05D001678 ORTHO05D001698 5.4e-07 58.9 142 31.0
Prupe.7G105100 Prunus persica HOM05D001678 ORTHO05D001698 7.0e-07 58.5 69 47.8
A09p37990 Brassica napus HOM05D001678 ORTHO05D001698 9.1e-07 58.2 200 25.5
BraA09t39310Z Brassica rapa HOM05D001678 ORTHO05D001698 9.1e-07 58.2 200 25.5
Glyma.15G233800 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 58.2 230 27.4
Glyma.18G292500 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 58.2 233 27.5
Prupe.1G130600 Prunus persica HOM05D001678 ORTHO05D001698 1.2e-06 57.8 172 27.9
Atru.chr7.1165 Acer truncatum HOM05D001678 ORTHO05D001698 1.6e-06 57.4 72 44.4
Atru.chr4.878 Acer truncatum HOM05D001678 ORTHO05D001698 2.0e-06 57.0 72 45.8
BraA06t25821Z Brassica rapa HOM05D001678 ORTHO05D001698 2.7e-06 56.6 188 27.1
SalBow1G2097 Salvia bowleyana HOM05D001678 ORTHO05D001698 2.7e-06 56.6 185 29.7
SalBow1G8270 Salvia bowleyana HOM05D001678 ORTHO05D001698 2.7e-06 56.6 71 39.4
RcHm_v2.0_Chr5g0052621 Rosa chinensis HOM05D001678 ORTHO05D001698 4.5e-06 55.8 57 47.4
RcHm_v2.0_Chr7g0220391 Rosa chinensis HOM05D001678 ORTHO05D001698 4.5e-06 55.8 69 49.3
Thhalv10029209m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 5.9e-06 55.5 196 24.5


User provided reference genes

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