Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001678', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001678' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001678' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001678' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001678' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001678', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001678' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001678' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001678' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001678' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001678', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001678' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001678' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001678' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001678' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001678', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001678' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '385', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' ) ), 'genes' => array( 'A01p28360' => 'bna', 'A01p29330' => 'bna', 'A01p29340' => 'bna', 'A01p29830' => 'bna', 'A02p17800' => 'bna', 'A03p43320' => 'bna', 'A04p17640' => 'bna', 'A04p22040' => 'bna', 'A05p21020' => 'bna', 'A06p22380' => 'bna', 'A06p22390' => 'bna', 'A07p20440' => 'bna', 'A08p16470' => 'bna', 'A09p15840' => 'bna', 'A09p28080' => 'bna', 'A09p34470' => 'bna', 'A09p37990' => 'bna', 'A10p11120' => 'bna', 'A10p12020' => 'bna', 'AL1G56710' => 'aly', 'AL1G65820' => 'aly', 'AL2G16050' => 'aly', 'AL4G17660' => 'aly', 'AL4G17900' => 'aly', 'AL4G17920' => 'aly', 'AL5G20810' => 'aly', 'AL8G38260' => 'aly', 'AT1G30140' => 'ath', 'AT2G29880' => 'ath', 'AT5G27260' => 'ath', 'AT5G28820' => 'ath', 'AT5G29613' => 'ath', 'AT5G35540' => 'ath', 'Atru.chr11.726' => 'acertr', 'Atru.chr12.2214' => 'acertr', 'Atru.chr13.1236' => 'acertr', 'Atru.chr13.2105' => 'acertr', 'Atru.chr13.2422' => 'acertr', 'Atru.chr2.1398' => 'acertr', 'Atru.chr2.1461' => 'acertr', 'Atru.chr2.2980' => 'acertr', 'Atru.chr2.502' => 'acertr', 'Atru.chr3.1295' => 'acertr', 'Atru.chr3.1756' => 'acertr', 'Atru.chr4.878' => 'acertr', 'Atru.chr5.2051' => 'acertr', 'Atru.chr5.2760' => 'acertr', 'Atru.chr6.1817' => 'acertr', 'Atru.chr6.779' => 'acertr', 'Atru.chr6.809' => 'acertr', 'Atru.chr7.1165' => 'acertr', 'Atru.chr9.64' => 'acertr', 'Atru.chr9.929' => 'acertr', 'BcaB01g00604' => 'bca', 'BcaB01g02681' => 'bca', 'BcaB02g11255' => 'bca', 'BcaB04g20271' => 'bca', 'BcaB05g23433' => 'bca', 'BcaB05g23520' => 'bca', 'BcaB08g36227' => 'bca', 'BcaB08g36228' => 'bca', 'BcaC01g00739' => 'bca', 'BcaC01g01504' => 'bca', 'BcaC01g04115' => 'bca', 'BcaC03g14168' => 'bca', 'BcaC03g17023' => 'bca', 'BcaC03g17938' => 'bca', 'BcaC04g21001' => 'bca', 'BcaC04g21004' => 'bca', 'BcaC05g25931' => 'bca', 'BcaC05g27161' => 'bca', 'BcaC06g34160' => 'bca', 'BcaC06g35122' => 'bca', 'BcaC06g35642' => 'bca', 'BcaC06g36603' => 'bca', 'BcaC07g37804' => 'bca', 'BcaC07g38385' => 'bca', 'BcaC09g49863' => 'bca', 'BcaNung00414' => 'bca', 'BolC1t03674H' => 'bol', 'BolC1t03676H' => 'bol', 'BolC2t07565H' => 'bol', 'BolC2t09580H' => 'bol', 'BolC2t09581H' => 'bol', 'BolC2t09582H' => 'bol', 'BolC2t09583H' => 'bol', 'BolC2t11022H' => 'bol', 'BolC2t11883H' => 'bol', 'BolC2t12169H' => 'bol', 'BolC3t15099H' => 'bol', 'BolC3t16754H' => 'bol', 'BolC3t19168H' => 'bol', 'BolC3t20376H' => 'bol', 'BolC3t21566H' => 'bol', 'BolC4t22829H' => 'bol', 'BolC4t23209H' => 'bol', 'BolC4t24027H' => 'bol', 'BolC4t24810H' => 'bol', 'BolC4t24811H' => 'bol', 'BolC5t31169H' => 'bol', 'BolC5t31786H' => 'bol', 'BolC5t32145H' => 'bol', 'BolC5t32191H' => 'bol', 'BolC5t32619H' => 'bol', 'BolC5t34755H' => 'bol', 'BolC6t36822H' => 'bol', 'BolC6t37091H' => 'bol', 'BolC6t37382H' => 'bol', 'BolC6t37384H' => 'bol', 'BolC6t37386H' => 'bol', 'BolC6t38994H' => 'bol', 'BolC7t40636H' => 'bol', 'BolC7t40637H' => 'bol', 'BolC7t41268H' => 'bol', 'BolC7t41455H' => 'bol', 'BolC8t48193H' => 'bol', 'BolC9t53596H' => 'bol', 'BolC9t53648H' => 'bol', 'BolC9t56511H' => 'bol', 'BolC9t57074H' => 'bol', 'BolC9t57919H' => 'bol', 'BraA01t03065Z' => 'bra', 'BraA01t03066Z' => 'bra', 'BraA01t03111Z' => 'bra', 'BraA01t03239Z' => 'bra', 'BraA04t16704Z' => 'bra', 'BraA05t20441Z' => 'bra', 'BraA05t21006Z' => 'bra', 'BraA06t24995Z' => 'bra', 'BraA06t25821Z' => 'bra', 'BraA07t28130Z' => 'bra', 'BraA09t39310Z' => 'bra', 'BraA10t43205Z' => 'bra', 'BraA10t43304Z' => 'bra', 'BraSC36t46033Z' => 'bra', 'C01p37100' => 'bna', 'C01p37120' => 'bna', 'C02p14410' => 'bna', 'C02p32520' => 'bna', 'C02p49350' => 'bna', 'C02p58150' => 'bna', 'C03p16640' => 'bna', 'C03p36980' => 'bna', 'C03p69150' => 'bna', 'C05p18830' => 'bna', 'C05p25710' => 'bna', 'C05p30510' => 'bna', 'C05p34590' => 'bna', 'C05p38790' => 'bna', 'C06p06690' => 'bna', 'C06p18860' => 'bna', 'C06p21980' => 'bna', 'C06p39020' => 'bna', 'C07p02260' => 'bna', 'C07p02270' => 'bna', 'C07p10100' => 'bna', 'C07p32060' => 'bna', 'C08p08910' => 'bna', 'C09p07340' => 'bna', 'C09p36790' => 'bna', 'C09p41880' => 'bna', 'C09p55800' => 'bna', 'CARHR004570' => 'chi', 'CARHR052440' => 'chi', 'Carub.0001s3425' => 'cru', 'Carub.0001s3536' => 'cru', 'Carub.0002s1509' => 'cru', 'Carub.0002s1800' => 'cru', 'Carub.0004s0707' => 'cru', 'Carub.0004s0720' => 'cru', 'Carub.0006s2633' => 'cru', 'Carub.0006s2679' => 'cru', 'Carub.0006s3595' => 'cru', 'Carub.0007s0094' => 'cru', 'Carub.0007s2622' => 'cru', 'Carub.0008s0702' => 'cru', 'Carub.0008s1510' => 'cru', 'Carub.0011s0001' => 'cru', 'DCAR_002869' => 'dca', 'DCAR_003999' => 'dca', 'DCAR_005360' => 'dca', 'DCAR_007692' => 'dca', 'DCAR_017789' => 'dca', 'DCAR_028638' => 'dca', 'FAN01G1612' => 'fan', 'FAN02G2409' => 'fan', 'FAN03G1731' => 'fan', 'FAN04G1238' => 'fan', 'FAN04G1870' => 'fan', 'FAN04G2958' => 'fan', 'FAN05G4968' => 'fan', 'FAN08G2072' => 'fan', 'FAN08G3647' => 'fan', 'FAN09G4289' => 'fan', 'FAN10G0526' => 'fan', 'FAN12G1326' => 'fan', 'FAN12G3116' => 'fan', 'FAN13G0399' => 'fan', 'FAN13G1605' => 'fan', 'FAN14G0608' => 'fan', 'FAN14G3339' => 'fan', 'FAN16G0227' => 'fan', 'FAN17G2083' => 'fan', 'FAN17G2696' => 'fan', 'FAN23G0320' => 'fan', 'FAN23G1752' => 'fan', 'FAN23G2509' => 'fan', 'FAN24G2506' => 'fan', 'FAN26G0826' => 'fan', 'FAN26G1256' => 'fan', 'FAN26G1383' => 'fan', 'FvH4_2g00551' => 'fve', 'FvH4_2g33311' => 'fve', 'FvH4_4g17330' => 'fve', 'FvH4_5g10081' => 'fve', 'FvH4_5g24690' => 'fve', 'FvH4_6g09770' => 'fve', 'FvH4_6g24700' => 'fve', 'FvH4_6g24701' => 'fve', 'FvH4_6g52063' => 'fve', 'Glyma.01G021800' => 'gma', 'Glyma.01G110000' => 'gma', 'Glyma.01G111800' => 'gma', 'Glyma.01G126100' => 'gma', 'Glyma.04G175200' => 'gma', 'Glyma.05G193100' => 'gma', 'Glyma.06G095100' => 'gma', 'Glyma.06G182400' => 'gma', 'Glyma.07G133600' => 'gma', 'Glyma.08G208800' => 'gma', 'Glyma.08G218300' => 'gma', 'Glyma.08G239700' => 'gma', 'Glyma.09G071200' => 'gma', 'Glyma.09G096200' => 'gma', 'Glyma.09G168100' => 'gma', 'Glyma.10G128600' => 'gma', 'Glyma.10G131100' => 'gma', 'Glyma.10G200900' => 'gma', 'Glyma.10G211500' => 'gma', 'Glyma.10G293700' => 'gma', 'Glyma.11G167500' => 'gma', 'Glyma.12G113000' => 'gma', 'Glyma.13G184400' => 'gma', 'Glyma.14G095600' => 'gma', 'Glyma.14G191800' => 'gma', 'Glyma.14G219200' => 'gma', 'Glyma.15G150600' => 'gma', 'Glyma.15G233800' => 'gma', 'Glyma.17G148300' => 'gma', 'Glyma.17G190600' => 'gma', 'Glyma.18G175000' => 'gma', 'Glyma.18G292500' => 'gma', 'Glyma.19G032300' => 'gma', 'Glyma.20G169100' => 'gma', 'Lj1A169T8' => 'lonja', 'Lj1C275G4' => 'lonja', 'Lj1C89T9' => 'lonja', 'Lj2A433T12' => 'lonja', 'Lj2A995G22' => 'lonja', 'Lj3C1037T5' => 'lonja', 'Lj5C344G1' => 'lonja', 'Lj6A398T11' => 'lonja', 'Lj8A161T43' => 'lonja', 'Lj8C578G2' => 'lonja', 'MD03G1206200' => 'mdo', 'MD03G1212300' => 'mdo', 'MD05G1104000' => 'mdo', 'MD05G1188000' => 'mdo', 'MD06G1083900' => 'mdo', 'MD08G1125600' => 'mdo', 'MD12G1017200' => 'mdo', 'MD16G1269500' => 'mdo', 'Medtr0002s1240' => 'mtr', 'Medtr0002s1260' => 'mtr', 'Medtr1g106600' => 'mtr', 'Medtr1g106608' => 'mtr', 'Medtr3g097540' => 'mtr', 'Medtr6g018520' => 'mtr', 'Medtr6g025650' => 'mtr', 'Medtr7g017480' => 'mtr', 'Medtr7g111990' => 'mtr', 'Oeu004532.1' => 'oeu', 'Oeu010520.1' => 'oeu', 'Oeu015820.2' => 'oeu', 'Oeu029512.1' => 'oeu', 'Oeu035920.1' => 'oeu', 'Oeu035952.1' => 'oeu', 'Oeu039328.1' => 'oeu', 'Oeu041480.1' => 'oeu', 'Oeu041525.1' => 'oeu', 'Oeu048642.1' => 'oeu', 'Oeu051357.1' => 'oeu', 'Oeu059447.1' => 'oeu', 'Oeu060645.1' => 'oeu', 'Oeu061131.1' => 'oeu', 'Os08g0249300' => 'osa', 'Prupe.1G130600' => 'ppe', 'Prupe.1G170700' => 'ppe', 'Prupe.1G177900' => 'ppe', 'Prupe.1G229800' => 'ppe', 'Prupe.2G137700' => 'ppe', 'Prupe.2G168600' => 'ppe', 'Prupe.3G105400' => 'ppe', 'Prupe.3G122800' => 'ppe', 'Prupe.4G156100' => 'ppe', 'Prupe.4G168300' => 'ppe', 'Prupe.5G010600' => 'ppe', 'Prupe.6G020000' => 'ppe', 'Prupe.6G133700' => 'ppe', 'Prupe.6G148000' => 'ppe', 'Prupe.6G164800' => 'ppe', 'Prupe.7G010100' => 'ppe', 'Prupe.7G052500' => 'ppe', 'Prupe.7G073100' => 'ppe', 'Prupe.7G084200' => 'ppe', 'Prupe.7G105100' => 'ppe', 'Prupe.8G061600' => 'ppe', 'PSO339G2111' => 'pso', 'PSO478G1052' => 'pso', 'PSO675G0018' => 'pso', 'PSO764G0063' => 'pso', 'RcHm_v2.0_Chr3g0476481' => 'rch', 'RcHm_v2.0_Chr4g0395221' => 'rch', 'RcHm_v2.0_Chr4g0409291' => 'rch', 'RcHm_v2.0_Chr5g0008231' => 'rch', 'RcHm_v2.0_Chr5g0019361' => 'rch', 'RcHm_v2.0_Chr5g0052621' => 'rch', 'RcHm_v2.0_Chr5g0052631' => 'rch', 'RcHm_v2.0_Chr6g0281401' => 'rch', 'RcHm_v2.0_Chr6g0297421' => 'rch', 'RcHm_v2.0_Chr7g0220391' => 'rch', 'RcHm_v2.0_Chr7g0237991' => 'rch', 'SalBow1G0950' => 'sbo', 'SalBow1G2097' => 'sbo', 'SalBow1G4633' => 'sbo', 'SalBow1G5470' => 'sbo', 'SalBow1G7086' => 'sbo', 'SalBow1G8112' => 'sbo', 'SalBow1G8139' => 'sbo', 'SalBow1G8270' => 'sbo', 'SalBow2G0634' => 'sbo', 'SalBow3G4530' => 'sbo', 'SalBow5G3870' => 'sbo', 'SalBow7G3201' => 'sbo', 'SalBow8G2409' => 'sbo', 'SalBow8G3237' => 'sbo', 'SGA_v2.0_scaffold1090G53835' => 'sas', 'SGA_v2.0_scaffold177G39408' => 'sas', 'SGA_v2.0_scaffold180G39663' => 'sas', 'SGA_v2.0_scaffold230G43377' => 'sas', 'SGA_v2.0_scaffold230G43378' => 'sas', 'SGA_v2.0_scaffold25G11062' => 'sas', 'SGA_v2.0_scaffold2614G54162' => 'sas', 'SGA_v2.0_scaffold27G11443' => 'sas', 'SGA_v2.0_scaffold27G11713' => 'sas', 'SGA_v2.0_scaffold296G47542' => 'sas', 'SGA_v2.0_scaffold3280G54305' => 'sas', 'SGA_v2.0_scaffold414G51212' => 'sas', 'SGA_v2.0_scaffold46G17365' => 'sas', 'SGA_v2.0_scaffold612G53189' => 'sas', 'SGA_v2.0_scaffold68G22889' => 'sas', 'SGA_v2.0_scaffold68G22949' => 'sas', 'SGA_v2.0_scaffold92G28257' => 'sas', 'SGA_v2.0_scaffold97G29236' => 'sas', 'Sp2g04200' => 'spa', 'Sp6g02750' => 'spa', 'Sp7g09060' => 'spa', 'Thhalv10002177m.g' => 'esa', 'Thhalv10005278m.g' => 'esa', 'Thhalv10010996m.g' => 'esa', 'Thhalv10015362m.g' => 'esa', 'Thhalv10017633m.g' => 'esa', 'Thhalv10017744m.g' => 'esa', 'Thhalv10022272m.g' => 'esa', 'Thhalv10023821m.g' => 'esa', 'Thhalv10024061m.g' => 'esa', 'Thhalv10027019m.g' => 'esa', 'Thhalv10029159m.g' => 'esa', 'Thhalv10029209m.g' => 'esa', 'Thhalv10029274m.g' => 'esa', 'Thhalv10029365m.g' => 'esa', 'Thhalv10029423m.g' => 'esa', 'TPR.G26654' => 'tpr', 'TPR.G27895' => 'tpr', 'TPR.G8361' => 'tpr' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001678' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001678' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001678' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001678' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151