Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 9.6e-90 333.6 180 100.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.3e-78 296.6 184 85.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 5.0e-70 268.1 182 77.5
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.7e-68 262.3 180 74.4
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 4.6e-68 261.5 187 79.7
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 7.9e-68 260.8 186 74.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 7.9e-68 260.8 186 74.7
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.0e-67 260.4 180 73.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.0e-67 260.4 186 74.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.8e-67 259.6 180 75.0
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.0e-67 258.8 186 74.2
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.9e-67 258.5 181 74.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.9e-67 258.5 181 74.6
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 3.9e-67 258.5 180 75.6
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.9e-67 258.5 186 74.2
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.5e-66 255.8 184 72.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.5e-66 255.8 194 74.7
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.3e-66 255.4 172 73.3
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 4.3e-66 255.0 177 74.6
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 4.3e-66 255.0 172 73.3
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.3e-66 255.0 172 73.3
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 7.4e-66 254.2 185 73.0
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.7e-66 253.8 180 74.4
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.3e-65 253.4 183 74.3
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.6e-65 253.1 180 73.9
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.2e-65 252.7 180 72.2
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.8e-65 252.3 172 72.7
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 3.7e-65 251.9 186 72.0
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.8e-65 251.5 180 71.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.3e-65 251.1 180 77.8
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.1e-64 250.4 181 70.7
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.1e-64 250.4 181 74.6
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.1e-64 250.4 181 74.6
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-64 250.0 178 74.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.8e-64 249.6 180 73.3
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.8e-64 249.6 181 74.6
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.4e-64 249.2 180 73.3
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 3.1e-64 248.8 183 72.1
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 3.1e-64 248.8 180 73.9
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 4.1e-64 248.4 180 73.3
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 6.9e-64 247.7 181 70.7
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.9e-64 247.7 180 71.1
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.5e-63 246.5 180 73.3
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.5e-63 246.5 149 84.6
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.5e-63 246.5 178 72.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-63 246.1 175 72.0
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.6e-63 245.7 178 71.9
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.6e-63 245.7 180 73.3
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.6e-63 245.7 179 73.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 3.4e-63 245.4 178 71.9
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 3.4e-63 245.4 178 71.9
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.5e-63 245.0 180 70.0
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 4.5e-63 245.0 181 70.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.9e-63 244.6 174 75.3
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.9e-63 244.6 150 82.0
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 5.9e-63 244.6 181 75.7
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 7.7e-63 244.2 178 71.3
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 7.7e-63 244.2 178 71.3
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 7.7e-63 244.2 180 70.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.3e-62 243.4 174 72.4
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.2e-62 242.7 174 67.8
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.2e-62 242.7 176 71.6
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.2e-62 242.7 178 69.1
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.9e-62 242.3 180 69.4
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.8e-62 241.9 171 75.4
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 3.8e-62 241.9 178 70.2
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.8e-62 241.9 181 70.2
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.8e-62 241.9 137 87.6
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 6.5e-62 241.1 178 70.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.5e-62 241.1 181 71.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.1e-61 240.4 181 70.2
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.9e-61 239.6 181 71.3
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.9e-61 239.6 172 73.8
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.9e-61 239.6 180 70.0
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.5e-61 239.2 180 69.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.5e-61 239.2 177 70.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.5e-61 239.2 172 68.6
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.2e-61 238.8 181 71.8
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.2e-61 238.4 181 70.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.5e-61 238.0 180 69.4
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 7.2e-61 237.7 173 71.1
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 9.4e-61 237.3 176 69.3
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 9.4e-61 237.3 179 70.9
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.2e-60 236.9 181 70.7
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-60 236.5 180 68.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.1e-60 236.1 185 69.2
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.1e-60 236.1 178 70.2
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.0e-59 233.8 181 71.3
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-59 233.4 182 67.0
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 175 68.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-59 233.0 179 67.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.0e-59 232.3 141 83.7
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.0e-59 232.3 180 68.9
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.0e-59 232.3 148 79.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 5.1e-59 231.5 143 81.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 5.1e-59 231.5 143 81.1
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 5.1e-59 231.5 179 67.0
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 5.1e-59 231.5 179 67.0
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.1e-59 231.5 177 65.5
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 5.1e-59 231.5 172 69.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 6.7e-59 231.1 145 77.2
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.5e-58 229.9 180 73.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.3e-58 228.8 178 69.1
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.3e-58 228.8 178 69.1
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 7.4e-58 227.6 139 82.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.4e-58 227.6 178 67.4
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-57 226.5 142 80.3
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.7e-57 226.5 146 78.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.8e-57 225.7 147 76.2
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.8e-57 225.7 172 72.7
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.8e-57 225.7 143 79.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 3.7e-57 225.3 139 81.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.7e-57 225.3 178 64.0
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 4.8e-57 224.9 144 75.7
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.8e-57 224.9 177 67.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.8e-56 223.0 175 70.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 9.1e-56 220.7 142 78.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 9.1e-56 220.7 171 67.8
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.6e-55 219.2 178 62.9
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.5e-55 218.4 146 75.3
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 5.9e-55 218.0 181 63.0
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.8e-54 215.3 177 63.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 5.0e-54 214.9 158 75.3
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.5e-53 212.6 180 61.7
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.2e-53 212.2 141 77.3
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.5e-53 211.5 182 69.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-52 210.3 133 82.0
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 6.7e-51 204.5 188 61.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 3.7e-49 198.7 253 47.8
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.4e-48 196.8 150 67.3
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-48 196.4 123 78.9
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 4.1e-48 195.3 177 57.1
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.7e-46 189.9 179 55.9
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.1e-45 187.2 176 59.7
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.6e-44 182.2 144 61.1
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.6e-44 182.2 143 58.7
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 8.0e-44 181.0 139 67.6
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 6.7e-43 177.9 177 52.0
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 6.7e-43 177.9 138 67.4
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.4e-34 149.1 99 73.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.2e-31 140.6 89 77.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.6e-31 140.2 88 78.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.6e-31 140.2 147 51.0
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.6e-31 140.2 104 71.2
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-31 139.4 84 81.0
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.7e-30 136.7 130 56.2
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.8e-30 135.6 148 48.6
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 8.6e-30 134.4 124 61.3
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 5.5e-29 131.7 117 59.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.0e-27 127.5 114 62.3
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.5e-23 112.1 124 48.4
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 2.9e-22 109.4 118 44.9
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.5e-21 107.1 86 66.3
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.5e-21 107.1 86 66.3
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.2e-18 97.4 105 41.9
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-17 94.0 62 71.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.9e-17 92.8 137 37.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.2e-15 87.4 89 49.4
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.6e-12 77.0 48 77.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 2.8e-12 76.3 85 52.9
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 4.0e-11 72.4 68 54.4
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.8e-11 71.6 71 56.3
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.2e-10 70.9 89 40.4
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.7e-09 67.0 88 47.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.1e-08 62.4 138 36.2
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 9.2e-08 61.2 110 39.1


User provided reference genes

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