Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 6.0e-68 260.8 137 100.0
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.8e-46 188.3 157 65.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.7e-44 182.2 157 65.0
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 3.7e-41 171.8 155 61.9
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.6e-39 165.6 154 59.1
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.0e-38 163.7 155 57.4
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-38 163.3 154 58.4
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.1e-37 160.2 143 62.9
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-37 160.2 154 57.8
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.4e-37 159.8 154 57.8
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 3.2e-37 158.7 155 54.8
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 7.2e-37 157.5 155 53.5
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.6e-36 156.4 151 57.0
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.0e-35 153.7 155 52.9
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.0e-34 149.4 155 53.5
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-34 149.4 153 55.6
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.6e-34 149.1 155 53.5
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.7e-34 147.1 153 54.9
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 9.7e-34 147.1 153 54.9
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.7e-33 146.4 153 55.6
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.7e-33 146.4 155 51.6
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.7e-33 145.2 155 52.9
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-32 142.9 154 51.9
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.4e-32 142.5 155 51.6
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 5.3e-32 141.4 155 51.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 5.3e-32 141.4 155 52.3
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.2e-31 140.2 155 51.0
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.2e-31 140.2 153 53.6
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.2e-31 140.2 155 51.0
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.0e-31 139.4 155 50.3
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 5.9e-31 137.9 155 48.4
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 7.7e-31 137.5 129 58.9
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-30 137.1 155 49.7
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-30 137.1 155 49.7
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.0e-30 137.1 153 52.3
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.3e-30 136.7 157 49.7
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.2e-30 136.0 155 47.7
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.9e-30 135.6 153 52.3
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.9e-30 135.6 150 51.3
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 5.0e-30 134.8 155 48.4
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 6.5e-30 134.4 155 47.1
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 8.5e-30 134.0 155 49.0
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.5e-30 134.0 155 49.0
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.1e-29 133.7 155 49.0
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.5e-29 132.5 152 49.3
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.2e-29 132.1 155 47.7
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 4.2e-29 131.7 155 50.3
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 5.5e-29 131.3 154 50.6
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.5e-29 131.3 155 50.3
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 5.5e-29 131.3 148 50.7
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 5.5e-29 131.3 154 48.7
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 5.5e-29 131.3 155 51.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 7.2e-29 131.0 155 53.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 7.2e-29 131.0 156 50.0
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 9.4e-29 130.6 155 47.7
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.4e-29 130.6 153 52.3
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.2e-28 130.2 152 48.7
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 2.1e-28 129.4 155 47.7
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.1e-28 129.4 151 49.7
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.7e-28 129.0 154 53.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-28 129.0 156 51.3
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.7e-28 129.0 155 47.7
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.7e-28 129.0 155 47.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.6e-28 128.6 157 49.7
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 3.6e-28 128.6 157 49.7
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.6e-28 128.6 155 49.0
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 4.7e-28 128.3 146 48.6
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.0e-27 127.1 155 48.4
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-27 127.1 156 50.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-27 127.1 156 50.6
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.0e-27 127.1 155 47.1
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.3e-27 125.9 102 68.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 3.0e-27 125.6 153 50.3
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 3.9e-27 125.2 147 50.3
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.8e-27 124.0 151 47.7
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.1e-26 123.6 155 50.3
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.5e-26 123.2 141 50.4
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.0e-26 122.9 155 46.5
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.6e-26 122.5 146 50.7
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.4e-26 121.7 157 45.9
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.7e-26 120.6 155 47.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.7e-26 120.6 155 47.7
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-25 120.2 155 45.2
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.3e-25 120.2 155 45.2
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.3e-25 120.2 155 45.2
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.7e-25 119.8 155 45.8
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.2e-25 119.4 156 46.8
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.2e-25 119.4 155 47.1
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.8e-25 119.0 147 50.3
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 4.8e-25 118.2 152 47.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.4e-24 116.7 155 45.8
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.4e-24 116.7 155 47.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 4.1e-24 115.2 151 45.7
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 7.0e-24 114.4 181 44.8
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 7.0e-24 114.4 151 45.7
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.0e-24 114.4 149 45.6
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.1e-24 114.0 151 45.7
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.2e-23 113.6 170 43.5
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.6e-23 112.5 155 43.2
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.5e-23 112.1 156 44.2
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.5e-23 112.1 155 43.2
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 4.5e-23 111.7 112 55.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 4.5e-23 111.7 155 46.5
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 5.9e-23 111.3 89 62.9
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.9e-23 111.3 155 44.5
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.3e-22 110.2 150 46.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.3e-22 110.2 150 46.7
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.3e-22 110.2 150 46.7
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.7e-22 109.8 154 45.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.7e-22 109.8 160 44.4
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.9e-22 109.0 120 50.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.9e-22 109.0 150 45.3
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.9e-22 109.0 167 41.9
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.5e-21 106.7 100 57.0
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.9e-21 106.3 129 49.6
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.9e-21 106.3 150 47.3
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.2e-21 105.1 140 42.9
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 9.4e-21 104.0 143 44.8
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 9.4e-21 104.0 143 44.8
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.6e-20 103.2 220 34.5
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.1e-20 102.8 155 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.7e-20 102.4 143 46.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.6e-20 102.1 155 43.9
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.6e-20 102.1 155 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.7e-20 101.7 143 44.8
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 8.0e-20 100.9 101 57.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.4e-19 100.1 130 50.0
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.4e-19 100.1 154 41.6
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.3e-19 99.4 199 37.2
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 5.2e-19 98.2 155 40.6
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.8e-19 97.8 155 42.6
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 8.8e-19 97.4 98 53.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-18 97.1 156 42.3
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-18 97.1 155 43.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.2e-18 97.1 155 41.3
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.0e-18 96.3 155 43.2
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.6e-18 95.9 155 43.2
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.7e-18 94.7 155 42.6
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 9.7e-18 94.0 156 41.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.3e-17 93.6 100 51.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.8e-17 92.4 98 52.0
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 8.3e-17 90.9 155 40.6
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.8e-16 89.7 115 48.7
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.1e-16 88.6 164 39.6
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.3e-16 88.2 156 37.8
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.0e-15 86.3 150 40.0
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 3.5e-15 85.5 182 36.3
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.5e-15 85.5 97 49.5
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 4.5e-15 85.1 155 38.1
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.5e-15 85.1 93 49.5
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.0e-14 84.0 98 48.0
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.7e-14 83.2 168 36.9
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.8e-14 82.0 139 40.3
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.5e-13 80.1 174 36.2
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.9e-13 79.7 157 35.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 3.2e-13 79.0 93 49.5
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.5e-13 78.2 94 48.9
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-12 77.0 94 48.9
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.6e-12 76.6 93 44.1
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.1e-12 76.3 92 48.9
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 8.0e-12 74.3 267 26.6
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.0e-11 73.9 86 47.7
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.4e-10 68.9 75 53.3
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.7e-09 66.6 85 49.4
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 4.1e-08 62.0 155 33.5
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.2e-07 60.5 157 33.8


User provided reference genes

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