Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 7.4e-127 457.2 231 100.0
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 1.3e-94 350.1 227 76.2
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 8.5e-91 337.4 230 72.2
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 3.0e-80 302.4 227 66.5
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 2.7e-76 289.3 226 64.6
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 3.5e-76 288.9 227 64.8
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 1.2e-73 280.4 227 60.4
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 3.0e-72 275.8 228 59.2
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 2.6e-71 272.7 224 61.6
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 1.7e-70 270.0 225 62.7
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 2.2e-70 269.6 224 61.2
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 4.9e-70 268.5 228 61.4
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 9.2e-69 264.2 228 59.2
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 9.2e-69 264.2 224 59.4
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.6e-68 263.5 224 59.4
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 1.6e-68 263.5 225 59.1
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.7e-67 260.0 224 58.9
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 6.6e-67 258.1 226 57.1
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 8.6e-67 257.7 227 55.9
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 2.5e-66 256.1 224 57.1
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.6e-65 253.4 227 55.1
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 3.1e-64 249.2 229 53.7
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 4.0e-64 248.8 229 52.8
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 4.0e-64 248.8 226 55.3
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 8.9e-64 247.7 231 54.5
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 4.4e-63 245.4 230 55.7
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 4.4e-63 245.4 226 53.5
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 5.8e-63 245.0 224 56.2
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.3e-62 243.8 227 55.5
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 1.7e-62 243.4 228 53.1
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 3.7e-62 242.3 226 55.8
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 3.7e-62 242.3 226 53.1
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 1.1e-61 240.7 229 52.0
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 9.2e-61 237.7 229 54.1
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 1.2e-60 237.3 228 52.6
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.7e-60 236.1 227 55.1
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 3.5e-60 235.7 229 50.7
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 1.3e-59 233.8 225 54.2
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 3.0e-59 232.6 227 50.2
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 3.0e-59 232.6 235 50.6
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 3.0e-59 232.6 228 53.5
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.9e-59 232.3 225 53.8
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 3.9e-59 232.3 226 53.5
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 6.6e-59 231.5 228 53.9
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 6.6e-59 231.5 227 49.8
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.1e-58 230.7 228 53.5
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 1.1e-58 230.7 227 52.0
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.5e-58 229.6 227 53.3
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 3.3e-58 229.2 224 53.6
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 7.3e-58 228.0 228 53.9
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 9.5e-58 227.6 225 53.3
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 9.5e-58 227.6 225 52.0
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.8e-56 223.4 232 53.9
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 2.6e-55 219.5 233 51.1
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 6.4e-54 214.9 227 55.5
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 8.3e-54 214.5 184 58.7
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 2.4e-53 213.0 180 60.0
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 3.2e-45 186.0 229 45.4
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 4.7e-41 172.2 176 48.3
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 1.1e-40 171.0 227 46.7
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 9.3e-37 157.9 152 52.0
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 1.5e-31 140.6 158 48.7
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 7.6e-31 138.3 126 51.6
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.5e-28 129.4 106 63.2
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.5e-28 129.4 106 63.2
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 9.6e-26 121.3 97 61.9
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 5.3e-24 115.5 237 33.8
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 9.9e-23 111.3 124 46.8
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 9.3e-21 104.8 241 32.8
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 4.6e-20 102.4 239 29.7
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 1.3e-19 100.9 235 32.8
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 6.7e-19 98.6 241 32.8
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.5e-18 97.4 241 32.4
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.5e-18 97.4 241 32.8
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 4.3e-18 95.9 108 45.4
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 5.6e-18 95.5 239 31.0
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 5.6e-18 95.5 235 29.4
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.4e-18 95.1 82 53.7
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.4e-18 95.1 82 53.7
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 2.1e-17 93.6 244 31.1
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 2.1e-17 93.6 241 32.0
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.1e-17 93.6 235 31.1
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.1e-16 91.3 238 32.4
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.1e-16 91.3 242 30.2
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 9.0e-16 88.2 243 28.4
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 1.2e-15 87.8 253 28.1
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 1.5e-15 87.4 241 28.2
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 1.5e-15 87.4 240 32.1
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.5e-15 87.4 243 31.7
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.5e-15 87.4 242 29.8
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 2.6e-15 86.7 244 30.7
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 3.4e-15 86.3 250 28.0
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 3.4e-15 86.3 248 28.6
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.4e-15 86.3 215 30.2
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 3.4e-15 86.3 110 44.5
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 4.5e-15 85.9 245 30.6
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 5.8e-15 85.5 241 29.5
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 5.8e-15 85.5 236 30.5
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 7.6e-15 85.1 242 31.4
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 7.6e-15 85.1 242 29.3
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 1.0e-14 84.7 250 28.0
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.7e-14 84.0 243 30.5
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.7e-14 84.0 219 27.9
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 2.9e-14 83.2 246 28.9
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.9e-14 83.2 189 32.3
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 3.8e-14 82.8 249 27.7
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 3.8e-14 82.8 245 30.2
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 3.8e-14 82.8 240 32.1
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 3.8e-14 82.8 246 30.1
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 4.9e-14 82.4 241 29.5
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 8.4e-14 81.6 243 30.9
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 8.4e-14 81.6 229 29.7
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.1e-13 81.3 239 28.0
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.4e-13 80.9 240 29.6
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.9e-13 80.5 221 30.8
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 2.5e-13 80.1 249 29.7
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 3.2e-13 79.7 212 32.5
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 3.2e-13 79.7 245 27.3
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 4.2e-13 79.3 230 29.6
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 5.5e-13 79.0 246 29.3
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 7.1e-13 78.6 238 29.4
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 7.1e-13 78.6 246 28.0
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 7.1e-13 78.6 210 31.4
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.2e-12 77.8 241 28.6
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 2.1e-12 77.0 241 29.9
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 2.1e-12 77.0 247 30.4
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-12 77.0 248 28.2
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 2.7e-12 76.6 246 30.1
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 2.7e-12 76.6 246 27.2
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 4.6e-12 75.9 245 28.6
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 6.0e-12 75.5 245 28.2
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 7.9e-12 75.1 249 27.7
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 1.3e-11 74.3 254 27.2
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 1.3e-11 74.3 246 28.0
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 1.8e-11 73.9 244 26.6
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 1.8e-11 73.9 244 26.6
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 2.3e-11 73.6 244 26.6
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 2.3e-11 73.6 246 26.0
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 2.3e-11 73.6 250 27.2
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 2.3e-11 73.6 248 28.2
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 3.0e-11 73.2 246 26.0
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 3.9e-11 72.8 254 27.2
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.9e-11 72.8 243 28.8
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 3.9e-11 72.8 248 27.4
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 5.1e-11 72.4 247 27.1
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 5.1e-11 72.4 246 29.3
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 5.1e-11 72.4 254 27.2
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 6.7e-11 72.0 241 28.6
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 1.1e-10 71.2 250 27.2
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 1.9e-10 70.5 227 28.6
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 1.9e-10 70.5 239 28.5
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 3.3e-10 69.7 233 30.9
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 3.3e-10 69.7 248 27.0
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.3e-10 69.7 218 27.1
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 3.3e-10 69.7 249 26.5
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 3.3e-10 69.7 245 27.8
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 5.7e-10 68.9 244 27.9
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 7.4e-10 68.6 249 27.7
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 9.7e-10 68.2 251 25.9
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.3e-09 67.8 246 26.8
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.8e-09 66.6 122 32.0
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 4.8e-09 65.9 238 26.5
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 3.1e-08 63.2 54 53.7
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 3.1e-08 63.2 241 26.1
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 4.1e-08 62.8 79 41.8
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 4.1e-08 62.8 182 30.8
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 5.3e-08 62.4 247 25.9
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 9.0e-08 61.6 83 42.2
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 2.0e-07 60.5 218 27.5
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 2.6e-07 60.1 241 24.9
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 3.4e-07 59.7 238 24.4
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.0e-06 58.2 238 25.2
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 3.8e-06 56.2 102 31.4
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 5.0e-06 55.8 48 52.1
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 6.5e-06 55.5 87 34.5


User provided reference genes

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