Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.1e-107 393.3 193 100.0
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.8e-102 375.9 188 97.3
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.9e-99 365.9 188 92.6
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.6e-98 362.8 188 92.6
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.7e-98 362.1 188 92.0
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.8e-97 359.4 188 92.0
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.4e-93 345.1 188 87.8
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 9.6e-88 327.0 188 85.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 5.3e-86 321.2 188 84.0
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 83.0
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 83.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.4e-85 318.5 188 84.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 3.4e-85 318.5 188 83.0
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 3.4e-85 318.5 188 83.0
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 83.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 83.5
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 83.5
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 83.5
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 83.5
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.9e-84 315.5 188 82.4
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.9e-84 315.5 188 83.0
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 3.8e-84 315.1 188 81.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 7.1e-83 310.8 188 79.8
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 9.3e-83 310.5 188 79.8
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.1e-82 309.3 188 79.8
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.7e-82 308.9 188 81.4
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.7e-82 308.9 188 80.3
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 78.7
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.9e-82 307.4 188 80.9
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 7.9e-82 307.4 188 80.3
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 7.9e-82 307.4 188 80.3
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 7.9e-82 307.4 188 80.3
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 7.9e-82 307.4 188 80.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.8e-81 306.2 188 78.2
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.8e-81 306.2 188 80.3
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.8e-81 306.2 188 80.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.3e-81 305.8 188 79.3
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 3.0e-81 305.4 188 80.3
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 3.9e-81 305.1 188 79.8
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 3.9e-81 305.1 188 79.8
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 3.9e-81 305.1 188 79.8
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 5.1e-81 304.7 188 79.8
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 5.1e-81 304.7 188 79.8
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.1e-81 304.7 188 80.3
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.7e-81 304.3 188 79.8
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 6.7e-81 304.3 188 79.8
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 8.7e-81 303.9 188 79.3
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-80 303.5 188 79.3
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.1e-80 303.5 188 79.3
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.1e-80 303.5 188 79.3
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-80 303.5 188 79.3
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 79.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 78.2
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.5e-80 302.4 188 79.3
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 3.3e-80 302.0 188 79.3
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 4.3e-80 301.6 188 78.7
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.7e-80 301.2 190 79.5
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.7e-80 301.2 190 79.5
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.7e-80 301.2 188 76.6
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 7.4e-80 300.8 188 78.7
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 7.4e-80 300.8 188 78.2
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 9.7e-80 300.4 181 81.2
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.7e-80 300.4 188 78.7
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.3e-79 300.1 188 76.6
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.3e-79 300.1 188 78.7
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.3e-79 300.1 188 78.7
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 78.2
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 78.2
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 79.3
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 79.3
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 79.3
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 78.2
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 79.3
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 2.2e-79 299.3 188 78.7
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 2.2e-79 299.3 188 78.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 6.3e-79 297.7 188 79.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 6.3e-79 297.7 188 77.7
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 6.3e-79 297.7 188 77.7
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 8.2e-79 297.4 188 78.2
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 8.2e-79 297.4 188 77.7
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.1e-78 297.0 188 78.7
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.1e-78 297.0 188 78.7
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.4e-78 296.6 188 77.1
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.4e-78 296.6 188 76.6
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.4e-78 296.6 188 76.6
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 77.7
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 78.2
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 3.1e-78 295.4 188 77.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 5.3e-78 294.7 188 77.7
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 9.0e-78 293.9 187 77.5
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.2e-77 293.5 188 75.0
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.5e-77 293.1 188 76.1
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.0e-77 292.7 188 76.1
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 2.0e-77 292.7 188 76.6
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.0e-77 292.7 188 77.1
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.6e-77 292.4 188 76.1
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.6e-77 292.4 188 76.1
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 3.4e-77 292.0 188 76.6
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 3.4e-77 292.0 188 76.6
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 3.4e-77 292.0 187 76.5
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 7.7e-77 290.8 188 75.0
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.7e-76 289.7 187 75.9
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.9e-76 288.9 187 75.4
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 2.9e-76 288.9 187 75.4
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 8.5e-76 287.3 188 75.5
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 8.5e-76 287.3 188 75.5
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.1e-75 287.0 188 74.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.9e-75 286.2 188 75.5
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.5e-75 285.8 187 74.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 3.2e-75 285.4 188 72.9
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.2e-75 285.0 188 73.4
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 4.2e-75 285.0 188 73.4
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 9.4e-75 283.9 188 72.9
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.2e-74 283.5 180 77.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.7e-74 282.3 188 72.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 4.6e-74 281.6 188 73.9
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 6.1e-74 281.2 188 72.9
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.3e-73 279.3 188 72.9
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 3.0e-73 278.9 188 75.5
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.7e-73 277.7 190 73.7
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.1e-72 276.9 190 73.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.1e-72 276.9 188 73.9
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 5.7e-72 274.6 188 71.3
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.8e-71 271.6 181 72.4
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.8e-70 269.6 170 77.6
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.9e-69 264.6 174 74.7
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.2e-66 256.9 180 72.2
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.6e-66 256.5 188 68.1
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 3.6e-66 255.4 180 71.1
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.6e-66 255.4 189 67.2
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.6e-66 255.4 189 67.2
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 4.7e-66 255.0 188 67.0
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.1e-64 250.4 188 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 4.4e-64 248.4 188 63.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.7e-63 245.4 188 68.1
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 4.8e-63 245.0 178 70.8
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 5.3e-62 241.5 188 65.4
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.5e-61 238.4 188 66.5
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 2.9e-60 235.7 188 62.8
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.9e-60 235.7 188 62.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.5e-59 232.6 189 63.0
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 3.2e-59 232.3 188 60.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 2.8e-55 219.2 177 61.0
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.4e-54 216.9 188 55.9
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.4e-54 216.9 181 61.9
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.6e-50 203.4 114 85.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 4.0e-49 198.7 166 65.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.4e-48 195.7 188 56.4
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 5.0e-44 181.8 188 47.3
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 2.0e-40 169.9 120 68.3
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.0e-37 159.8 108 74.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-36 156.0 173 53.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.8e-34 149.4 124 60.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-33 147.1 188 46.8
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.8e-33 144.8 84 84.5
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 8.9e-33 144.4 122 63.9
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-25 120.2 78 73.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.7e-21 106.3 92 63.0
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.7e-20 103.6 65 73.8
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 8.9e-09 64.7 39 74.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 2.9e-07 59.7 34 79.4


User provided reference genes

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