Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 4.6e-52 207.6 104 100.0
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 5.7e-10 67.8 37 89.2
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 7.4e-10 67.4 42 83.3
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.3e-09 66.6 34 94.1
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.3e-09 66.6 37 86.5
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.3e-09 66.6 34 94.1
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.3e-09 66.6 34 94.1
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.3e-09 66.6 37 86.5
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.3e-09 66.6 34 94.1
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.7e-09 66.2 37 86.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.8e-09 65.5 34 91.2
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.8e-09 65.5 34 91.2
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.8e-09 65.5 34 91.2
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.8e-09 65.5 37 83.8
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 3.7e-09 65.1 34 91.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.7e-09 65.1 34 88.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 4.8e-09 64.7 37 86.5
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.8e-09 64.7 34 88.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 6.3e-09 64.3 37 81.1
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 6.3e-09 64.3 34 88.2
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 6.3e-09 64.3 34 88.2
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 8.2e-09 63.9 34 91.2
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.1e-08 63.5 37 81.1
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 1.1e-08 63.5 37 83.8
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-08 63.5 37 83.8
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-08 63.5 37 83.8
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.1e-08 63.5 34 91.2
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.1e-08 63.5 34 88.2
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 1.1e-08 63.5 34 91.2
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.1e-08 63.5 34 88.2
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.1e-08 63.5 37 83.8
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-08 63.2 34 91.2
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.4e-08 63.2 34 91.2
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-08 63.2 34 91.2
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.4e-08 63.2 34 88.2
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.4e-08 63.2 34 85.3
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.4e-08 63.2 34 85.3
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.4e-08 63.2 37 83.8
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.4e-08 63.2 34 85.3
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 1.8e-08 62.8 34 88.2
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.8e-08 62.8 34 88.2
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.8e-08 62.8 37 81.1
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 88.2
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 88.2
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 85.3
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 85.3
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 85.3
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 88.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.4e-08 62.4 34 85.3
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 85.3
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 85.3
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 85.3
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 85.3
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 82.4
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 82.4
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 82.4
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 3.1e-08 62.0 37 81.1
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.1e-08 62.0 34 85.3
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 4.1e-08 61.6 34 82.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 4.1e-08 61.6 34 82.4
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 4.1e-08 61.6 34 82.4
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 4.1e-08 61.6 37 83.8
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 4.1e-08 61.6 34 85.3
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 5.3e-08 61.2 34 85.3
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 5.3e-08 61.2 34 85.3
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 5.3e-08 61.2 34 88.2
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 5.3e-08 61.2 37 78.4
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 5.3e-08 61.2 34 85.3
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.3e-08 61.2 34 85.3
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 6.9e-08 60.8 34 88.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 6.9e-08 60.8 37 81.1
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.9e-08 60.8 37 78.4
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 6.9e-08 60.8 34 82.4
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 9.1e-08 60.5 34 79.4
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 79.4
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 82.4
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 82.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 76.5
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 76.5
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 85.3
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.2e-07 60.1 34 82.4
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.5e-07 59.7 34 79.4
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.5e-07 59.7 33 84.8
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.5e-07 59.7 34 85.3
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.0e-07 59.3 37 78.4
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.0e-07 59.3 37 75.7
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.0e-07 59.3 34 82.4
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 2.0e-07 59.3 34 85.3
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.0e-07 59.3 34 76.5
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 2.6e-07 58.9 34 82.4
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.6e-07 58.9 34 76.5
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.6e-07 58.9 34 82.4
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.6e-07 58.9 34 85.3
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.6e-07 58.9 34 76.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 2.6e-07 58.9 34 76.5
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.4e-07 58.5 34 79.4
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 3.4e-07 58.5 37 78.4
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 3.4e-07 58.5 34 79.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 4.5e-07 58.2 34 76.5
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 4.5e-07 58.2 34 82.4
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 5.9e-07 57.8 37 73.0
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 7.7e-07 57.4 33 78.8
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 7.7e-07 57.4 34 76.5
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.0e-06 57.0 33 81.8
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 1.0e-06 57.0 33 78.8
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.0e-06 57.0 35 77.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.3e-06 56.6 34 79.4
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.3e-06 56.6 34 76.5
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.3e-06 56.6 38 71.1
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.9e-06 55.5 34 76.5
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.9e-06 55.5 34 76.5
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 3.8e-06 55.1 34 73.5
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 6.5e-06 54.3 34 79.4
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 6.5e-06 54.3 42 66.7
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 6.5e-06 54.3 39 71.8


User provided reference genes

Program Settings