Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold65G22225 Striga asiatica HOM05D003333 ORTHO05D003836 1.2e-180 636.3 311 100.0
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 2.4e-27 127.1 171 42.1
Manes.14G145200 Manihot esculenta HOM05D003333 ORTHO05D003836 6.9e-27 125.6 162 43.8
Atru.chr6.2482 Acer truncatum HOM05D003333 ORTHO05D003836 3.2e-24 116.7 183 38.8
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.3e-22 111.3 160 38.8
SGA_v2.0_scaffold265G46094 Striga asiatica HOM05D003333 ORTHO05D003836 4.3e-21 106.3 162 40.7
A10p15260 Brassica napus HOM05D003333 ORTHO05D003836 2.1e-20 104.0 161 34.8
BraA10t43607Z Brassica rapa HOM05D003333 ORTHO05D003836 2.1e-20 104.0 161 34.8
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 3.6e-20 103.2 160 38.1
Oeu018383.3 Olea europaea HOM05D003333 ORTHO05D003836 3.6e-20 103.2 145 40.0
Dinv42841 Davidia involucrata HOM05D003333 ORTHO05D003836 1.4e-19 101.3 191 34.6
ATR0019G010 Amborella trichopoda HOM05D003333 ORTHO05D003836 1.8e-19 100.9 183 35.5
AL8G33960 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 5.3e-19 99.4 182 34.6
Migut.J01369 Erythranthe guttata HOM05D003333 ORTHO05D003836 1.5e-18 97.8 177 35.6
Cc00_g27050 Coffea canephora HOM05D003333 ORTHO05D003836 2.0e-18 97.4 162 35.8
Zm00001eb177870 Zea mays HOM05D003333 ORTHO05D003836 4.5e-18 96.3 173 35.8
BolC9t57828H Brassica oleracea HOM05D003333 ORTHO05D003836 1.7e-17 94.4 161 32.3
BcaB05g24930 Brassica carinata HOM05D003333 ORTHO05D003836 2.2e-17 94.0 164 35.4
Dinv43259 Davidia involucrata HOM05D003333 ORTHO05D003836 3.8e-17 93.2 199 32.7
Prupe.7G264700 Prunus persica HOM05D003333 ORTHO05D003836 3.2e-16 90.1 162 35.8
RcHm_v2.0_Chr2g0085481 Rosa chinensis HOM05D003333 ORTHO05D003836 4.2e-16 89.7 162 35.8
MSTRG.6153 Avicennia marina HOM05D003333 ORTHO05D003836 9.3e-16 88.6 162 36.4
CANSAT11G2442 Cannabis sativa HOM05D003333 ORTHO05D003836 1.2e-15 88.2 162 34.6
SalBow1G6609 Salvia bowleyana HOM05D003333 ORTHO05D003836 1.2e-15 88.2 162 35.2
Lj9A718T41 Lonicera japonica HOM05D003333 ORTHO05D003836 1.6e-15 87.8 162 34.6
Aqoxy7G03374 Aquilegia oxysepala HOM05D003333 ORTHO05D003836 2.1e-15 87.4 182 34.6
CSS0000248 Camellia sinensis var. sinensis HOM05D003333 ORTHO05D003836 2.1e-15 87.4 162 34.6
HanXRQChr09g0244551 Helianthus annuus HOM05D003333 ORTHO05D003836 2.1e-15 87.4 172 32.0
Gohir.A05G052600 Gossypium hirsutum HOM05D003333 ORTHO05D003836 2.7e-15 87.0 162 34.6
ECA240G0541 Erigeron canadensis HOM05D003333 ORTHO05D003836 4.6e-15 86.3 162 32.1
DCAR_019403 Daucus carota HOM05D003333 ORTHO05D003836 6.0e-15 85.9 171 32.7
Rhsim01G0028000 Rhododendron simsii HOM05D003333 ORTHO05D003836 6.0e-15 85.9 162 35.2
TPR.G24850 Trifolium pratense HOM05D003333 ORTHO05D003836 6.0e-15 85.9 161 34.2
Hma1.2p1_0222F.1_g093690 Hydrangea macrophylla HOM05D003333 ORTHO05D003836 7.9e-15 85.5 162 34.6
Gohir.D05G054300 Gossypium hirsutum HOM05D003333 ORTHO05D003836 1.0e-14 85.1 162 34.0
Gorai.009G056000 Gossypium raimondii HOM05D003333 ORTHO05D003836 1.0e-14 85.1 162 34.0
BcaB03g12653 Brassica carinata HOM05D003333 ORTHO05D003836 1.3e-14 84.7 156 33.3
Sp7g28530 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.3e-14 84.7 171 34.5
TWI34G1096 Tripterygium wilfordii HOM05D003333 ORTHO05D003836 1.3e-14 84.7 162 34.0
C09p49770 Brassica napus HOM05D003333 ORTHO05D003836 2.3e-14 84.0 161 29.2
TAR636G2329 Trochodendron aralioides HOM05D003333 ORTHO05D003836 2.3e-14 84.0 202 32.2
MD02G1006200 Malus domestica HOM05D003333 ORTHO05D003836 3.0e-14 83.6 162 34.0
arahy.Tifrunner.gnm1.ann1.LQ9XAK Arachis hypogaea HOM05D003333 ORTHO05D003836 3.9e-14 83.2 161 33.5
Duzib168G0432 Durio zibethinus HOM05D003333 ORTHO05D003836 3.9e-14 83.2 162 32.7
vmacro16794 Vaccinium macrocarpon HOM05D003333 ORTHO05D003836 6.7e-14 82.4 162 34.6
FAN26G2607 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.1e-13 81.6 162 34.6
Psat0s3930g0160 Pisum sativum HOM05D003333 ORTHO05D003836 1.1e-13 81.6 163 32.5
BolC7t46269H Brassica oleracea HOM05D003333 ORTHO05D003836 1.9e-13 80.9 140 35.7
Eucgr.L01446 Eucalyptus grandis HOM05D003333 ORTHO05D003836 4.3e-13 79.7 175 31.4
Thecc.09G028300 Theobroma cacao HOM05D003333 ORTHO05D003836 5.6e-13 79.3 160 31.9
FAN23G0545 Fragaria x ananassa HOM05D003333 ORTHO05D003836 7.4e-13 79.0 162 33.3
Ciclev10008985m.g Citrus clementina HOM05D003333 ORTHO05D003836 9.6e-13 78.6 173 33.5
Sc08g0009270 Simmondsia chinensis HOM05D003333 ORTHO05D003836 1.6e-12 77.8 185 31.4
Aa31LG2G19800 Aethionema arabicum HOM05D003333 ORTHO05D003836 2.1e-12 77.4 142 34.5
FvH4_1g00760 Fragaria vesca HOM05D003333 ORTHO05D003836 2.1e-12 77.4 162 32.7
FAN28G1118 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.1e-12 77.4 162 32.7
Peaxi162Scf00267g00510 Petunia axillaris HOM05D003333 ORTHO05D003836 2.1e-12 77.4 202 28.7
Lj4g0011279 Lotus japonicus HOM05D003333 ORTHO05D003836 3.7e-12 76.6 162 32.1
Oeu021312.1 Olea europaea HOM05D003333 ORTHO05D003836 3.7e-12 76.6 162 31.5
Eucgr.C02501 Eucalyptus grandis HOM05D003333 ORTHO05D003836 4.8e-12 76.3 162 32.7
Eucgr.L03182 Eucalyptus grandis HOM05D003333 ORTHO05D003836 4.8e-12 76.3 162 32.7
Medtr4g130620 Medicago truncatula HOM05D003333 ORTHO05D003836 4.8e-12 76.3 162 31.5
Sabra18G0089700 Salix brachista HOM05D003333 ORTHO05D003836 4.8e-12 76.3 162 32.7
arahy.Tifrunner.gnm1.ann1.GH9EZK Arachis hypogaea HOM05D003333 ORTHO05D003836 6.2e-12 75.9 161 32.3
Ca_21138_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 6.2e-12 75.9 162 30.2
Ca_21143_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 6.2e-12 75.9 162 30.2
FAN18G2716 Fragaria x ananassa HOM05D003333 ORTHO05D003836 6.2e-12 75.9 140 34.3
Nn8g39960 Nelumbo nucifera HOM05D003333 ORTHO05D003836 6.2e-12 75.9 162 32.1
CiPaw.15G166600 Carya illinoinensis HOM05D003333 ORTHO05D003836 1.1e-11 75.1 162 32.7
FvH4_5g27030 Fragaria vesca HOM05D003333 ORTHO05D003836 1.4e-11 74.7 125 36.8
AUR62028344 Chenopodium quinoa HOM05D003333 ORTHO05D003836 2.4e-11 73.9 161 34.2
Carub.0005s1014 Capsella rubella HOM05D003333 ORTHO05D003836 3.1e-11 73.6 175 28.0
Cfa020808 Carpinus fangiana HOM05D003333 ORTHO05D003836 3.1e-11 73.6 172 30.2
Phvul.003G155100 Phaseolus vulgaris HOM05D003333 ORTHO05D003836 4.0e-11 73.2 172 30.2
BcaC09g51853 Brassica carinata HOM05D003333 ORTHO05D003836 5.3e-11 72.8 143 31.5
CARHR238520 Cardamine hirsuta HOM05D003333 ORTHO05D003836 5.3e-11 72.8 165 33.9
BcaNung04558 Brassica carinata HOM05D003333 ORTHO05D003836 6.9e-11 72.4 162 30.2
Haze_19185 Corylus avellana HOM05D003333 ORTHO05D003836 6.9e-11 72.4 167 31.1
Lsat_1_v5_gn_7_50080 Lactuca sativa HOM05D003333 ORTHO05D003836 6.9e-11 72.4 178 29.2
Carub.0008s1843 Capsella rubella HOM05D003333 ORTHO05D003836 2.0e-10 70.9 160 29.4
Lalb_Chr13g0300781 Lupinus albus HOM05D003333 ORTHO05D003836 2.0e-10 70.9 104 39.4
EL10Ac8g18939 Beta vulgaris HOM05D003333 ORTHO05D003836 2.6e-10 70.5 190 29.5
BcaNung00576 Brassica carinata HOM05D003333 ORTHO05D003836 5.8e-10 69.3 162 29.0
C07p58110 Brassica napus HOM05D003333 ORTHO05D003836 5.8e-10 69.3 162 29.0
Dinv41364 Davidia involucrata HOM05D003333 ORTHO05D003836 5.8e-10 69.3 214 29.4
Potri.018G104900 Populus trichocarpa HOM05D003333 ORTHO05D003836 1.0e-09 68.6 162 31.5
QL02p093741 Quercus lobata HOM05D003333 ORTHO05D003836 1.0e-09 68.6 178 29.8
Ah.14g084600 Amaranthus hybridus HOM05D003333 ORTHO05D003836 2.2e-09 67.4 203 29.6
VMungo1215G1683 Vigna mungo HOM05D003333 ORTHO05D003836 2.2e-09 67.4 162 29.0
CARHR271670 Cardamine hirsuta HOM05D003333 ORTHO05D003836 2.9e-09 67.0 160 29.4
Glyma.02G205200 Glycine max HOM05D003333 ORTHO05D003836 2.9e-09 67.0 161 29.8
MBI15_g18227_MAGBIO Magnolia biondii HOM05D003333 ORTHO05D003836 2.9e-09 67.0 173 30.1
Sed0000092 Sechium edule HOM05D003333 ORTHO05D003836 4.9e-09 66.2 180 30.0
Aa31LG2G19840 Aethionema arabicum HOM05D003333 ORTHO05D003836 8.4e-09 65.5 132 31.1
BcaC09g51854 Brassica carinata HOM05D003333 ORTHO05D003836 8.4e-09 65.5 164 26.2
BolC1t00817H Brassica oleracea HOM05D003333 ORTHO05D003836 8.4e-09 65.5 164 26.2
FAN13G1111 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.4e-09 65.5 164 29.9
Aa31LG3G13720 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.1e-08 65.1 177 27.7
Hund08925 Selenicereus undatus HOM05D003333 ORTHO05D003836 1.1e-08 65.1 172 27.9
A03p60210 Brassica napus HOM05D003333 ORTHO05D003836 3.2e-08 63.5 162 27.8
CDE04G3371 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 5.5e-08 62.8 172 27.9
PGR142G2767 Punica granatum HOM05D003333 ORTHO05D003836 5.5e-08 62.8 201 27.9
AUR62025341 Chenopodium quinoa HOM05D003333 ORTHO05D003836 9.3e-08 62.0 172 29.7
THA.LOC104803544 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 9.3e-08 62.0 162 27.2
HPP92_013422 Vanilla planifolia HOM05D003333 ORTHO05D003836 9.3e-08 62.0 160 28.1
FAN21G3730 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.6e-07 61.2 153 30.1
ClCG02G014400 Citrullus lanatus HOM05D003333 ORTHO05D003836 2.1e-07 60.8 161 29.8
Solyc07g005750.3 Solanum lycopersicum HOM05D003333 ORTHO05D003836 3.5e-07 60.1 42 61.9
Sopen07g001850 Solanum pennellii HOM05D003333 ORTHO05D003836 3.5e-07 60.1 42 61.9
CsaV3_2G007600 Cucumis sativus L. HOM05D003333 ORTHO05D003836 6.0e-07 59.3 161 29.2
MELO3C004126.2 Cucumis melo HOM05D003333 ORTHO05D003836 7.9e-07 58.9 161 29.8
FvH4_5g27040 Fragaria vesca HOM05D003333 ORTHO05D003836 7.9e-07 58.9 164 28.0
Ah.14g084580 Amaranthus hybridus HOM05D003333 ORTHO05D003836 1.0e-06 58.5 202 27.2
PSO541G3342 Papaver somniferum HOM05D003333 ORTHO05D003836 1.0e-06 58.5 184 29.3
PGSC0003DMG400011146 Solanum tuberosum HOM05D003333 ORTHO05D003836 1.3e-06 58.2 41 58.5
Nitab4.5_0002320g0010 Nicotiana tabacum HOM05D003333 ORTHO05D003836 1.8e-06 57.8 43 58.1
Nitab4.5_0002724g0090 Nicotiana tabacum HOM05D003333 ORTHO05D003836 2.3e-06 57.4 43 58.1
SEGI_02706 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 2.3e-06 57.4 159 25.8
BcaNung00575 Brassica carinata HOM05D003333 ORTHO05D003836 3.0e-06 57.0 42 57.1
BcaNung04559 Brassica carinata HOM05D003333 ORTHO05D003836 3.0e-06 57.0 74 44.6
C07p58100 Brassica napus HOM05D003333 ORTHO05D003836 3.0e-06 57.0 42 57.1
CAN.G160.47 Capsicum annuum HOM05D003333 ORTHO05D003836 3.0e-06 57.0 44 54.5
TPR.G5421 Trifolium pratense HOM05D003333 ORTHO05D003836 3.0e-06 57.0 55 45.5
C07p58120 Brassica napus HOM05D003333 ORTHO05D003836 3.9e-06 56.6 73 41.1
BolC7t46271H Brassica oleracea HOM05D003333 ORTHO05D003836 3.9e-06 56.6 73 41.1
Carub.0005s1013 Capsella rubella HOM05D003333 ORTHO05D003836 3.9e-06 56.6 110 30.9
Sp7g28520 Schrenkiella parvula HOM05D003333 ORTHO05D003836 3.9e-06 56.6 43 53.5
FAN08G3193 Fragaria x ananassa HOM05D003333 ORTHO05D003836 5.1e-06 56.2 167 27.5
C01p08310 Brassica napus HOM05D003333 ORTHO05D003836 6.7e-06 55.8 44 52.3
Peaxi162Scf00753g00011 Petunia axillaris HOM05D003333 ORTHO05D003836 6.7e-06 55.8 55 47.3
FAN26G3012 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.7e-06 55.5 167 27.5


User provided reference genes

Program Settings