Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 1.1e-164 583.2 289 100.0
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 2.7e-142 508.8 287 86.8
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.2e-139 500.0 278 88.1
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 4.7e-139 498.0 332 76.2
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.4e-138 496.5 276 88.0
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 5.2e-138 494.6 280 87.1
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 8.9e-138 493.8 279 86.0
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.5e-137 493.0 278 87.4
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 9.9e-137 490.3 279 86.7
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.1e-135 486.9 276 85.1
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 1.4e-135 486.5 276 85.5
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 4.1e-135 485.0 279 85.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.1e-135 485.0 278 84.2
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 9.2e-135 483.8 278 84.2
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.2e-134 483.4 278 85.6
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.1e-134 482.6 278 83.8
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 7.8e-134 480.7 276 85.5
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 7.8e-134 480.7 278 84.5
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 1.3e-133 479.9 278 83.5
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.3e-133 479.2 279 83.5
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.3e-133 479.2 278 84.9
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 5.1e-133 478.0 278 84.9
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-132 476.9 280 83.6
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.5e-132 475.7 278 84.5
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 4.3e-132 474.9 278 83.1
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 5.6e-132 474.6 278 84.2
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 7.3e-132 474.2 278 83.8
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.3e-132 474.2 278 84.2
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 7.3e-132 474.2 278 82.4
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 9.5e-132 473.8 278 84.2
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 9.5e-132 473.8 278 84.2
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 9.5e-132 473.8 281 82.6
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.6e-131 471.9 280 80.7
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 1.1e-130 470.3 295 80.7
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.4e-130 469.9 278 82.0
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.4e-130 469.9 278 83.1
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.8e-130 469.5 276 82.6
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.4e-130 469.2 278 83.5
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 2.4e-130 469.2 278 83.1
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 4.0e-130 468.4 278 82.7
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 5.2e-130 468.0 278 82.4
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 5.2e-130 468.0 280 81.4
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 6.8e-130 467.6 278 83.1
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.2e-129 466.8 278 82.0
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.5e-129 466.5 280 82.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.5e-129 466.5 278 82.7
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.5e-129 466.5 279 82.8
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.0e-129 466.1 278 82.4
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.0e-129 466.1 278 82.4
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 2.0e-129 466.1 279 82.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.6e-129 465.7 278 82.4
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 4.4e-129 464.9 279 82.1
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 4.4e-129 464.9 280 82.1
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.4e-129 464.9 278 82.0
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 5.8e-129 464.5 278 81.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.6e-129 464.2 269 84.0
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 9.9e-129 463.8 280 81.8
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.3e-128 463.4 278 82.4
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 1.3e-128 463.4 278 81.3
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 2.2e-128 462.6 278 81.7
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.9e-128 462.2 279 82.1
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 2.9e-128 462.2 278 82.0
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.8e-128 461.8 278 80.9
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.8e-128 461.8 278 81.7
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 4.9e-128 461.5 278 82.0
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 4.9e-128 461.5 278 82.0
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 8.4e-128 460.7 270 83.7
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 8.4e-128 460.7 278 81.7
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.1e-127 460.3 278 82.4
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.4e-127 459.9 278 81.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.4e-127 459.9 278 81.7
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.9e-127 459.5 278 82.0
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.9e-127 459.5 255 87.8
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.2e-127 458.4 281 80.8
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.2e-127 458.4 276 80.8
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 5.4e-127 458.0 276 80.4
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 7.1e-127 457.6 279 81.7
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 9.2e-127 457.2 278 80.9
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 1.2e-126 456.8 276 81.9
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.6e-126 456.4 278 81.7
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.6e-126 456.4 278 81.7
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.6e-126 456.4 278 79.9
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 2.1e-126 456.1 279 81.0
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.1e-126 456.1 278 81.7
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 2.7e-126 455.7 276 78.6
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.3e-125 453.4 278 79.5
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.3e-125 452.6 278 80.2
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 5.1e-125 451.4 279 80.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 6.6e-125 451.1 278 79.5
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.1e-124 450.3 278 79.9
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.5e-124 449.1 278 79.5
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.5e-124 449.1 278 79.5
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 9.6e-124 447.2 274 79.9
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 9.6e-124 447.2 278 79.1
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 9.6e-124 447.2 278 77.7
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 8.1e-123 444.1 274 78.5
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 8.1e-123 444.1 276 78.6
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 8.1e-123 444.1 278 78.4
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.1e-122 443.7 278 78.1
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-122 443.4 278 80.2
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.8e-122 443.0 268 81.0
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.8e-122 443.0 274 78.5
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 3.1e-122 442.2 317 71.3
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 3.1e-122 442.2 278 77.3
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 4.0e-122 441.8 278 75.9
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 5.3e-122 441.4 278 77.7
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 5.3e-122 441.4 278 77.3
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 6.9e-122 441.0 278 79.9
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 6.9e-122 441.0 278 79.9
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 2.6e-121 439.1 278 79.5
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 2.6e-121 439.1 278 76.3
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 4.4e-121 438.3 278 78.4
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 4.4e-121 438.3 278 75.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.3e-120 436.8 278 78.4
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.7e-120 436.4 278 78.4
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 4.9e-120 434.9 274 78.5
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.1e-119 433.7 276 77.5
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 5.4e-119 431.4 276 75.7
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 7.1e-119 431.0 270 77.8
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 9.3e-119 430.6 270 77.4
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 9.3e-119 430.6 270 77.4
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 9.3e-119 430.6 270 77.4
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 9.3e-119 430.6 270 77.4
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 9.3e-119 430.6 270 77.4
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 1.0e-117 427.2 274 76.3
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.0e-117 427.2 278 75.5
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 6.6e-117 424.5 278 77.7
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 6.6e-117 424.5 280 76.8
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 8.7e-117 424.1 278 75.2
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.3e-116 422.2 278 74.5
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 3.3e-116 422.2 280 76.8
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 7.3e-116 421.0 278 74.5
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 9.6e-116 420.6 278 73.7
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 2.1e-115 419.5 277 73.6
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 3.6e-115 418.7 268 77.2
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 6.9e-114 414.5 275 72.7
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.2e-113 413.7 276 73.9
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.6e-113 412.5 269 74.7
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 2.6e-113 412.5 276 73.6
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 5.4e-111 404.8 274 71.2
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.8e-109 399.8 274 70.8
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.9e-108 396.4 273 71.1
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 5.6e-108 394.8 234 81.2
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 3.1e-106 389.0 280 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.5e-103 379.4 280 65.4
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 4.2e-103 378.6 294 67.3
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.1e-103 377.9 278 63.7
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.8e-101 373.2 278 64.0
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.9e-100 369.8 278 64.4
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 3.7e-99 365.5 279 62.4
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 3.4e-97 359.0 276 63.0
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 4.5e-97 358.6 282 61.3
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 8.4e-96 354.4 205 83.9
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 1.4e-95 353.6 251 70.5
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.3e-91 340.5 201 80.1
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.2e-89 334.0 192 82.8
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.5e-89 333.6 275 58.2
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 7.7e-89 331.3 219 74.4
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.2e-88 329.7 255 69.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.1e-86 323.2 197 82.2
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.8e-85 320.1 263 63.5
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.5e-81 307.0 288 54.2
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 2.0e-81 306.6 167 88.6
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 5.9e-81 305.1 280 53.2
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 2.7e-78 296.2 185 78.9
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 2.0e-76 290.0 304 49.3
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 1.7e-72 276.9 179 74.9
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.1e-71 274.2 279 49.8
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.0e-64 251.1 170 77.1
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 8.8e-53 211.5 168 64.9
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 7.5e-44 181.8 101 85.1
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 5.9e-41 172.2 120 70.0
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 2.9e-40 169.9 148 62.2
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.5e-39 167.5 120 68.3
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.0e-37 161.4 115 66.1
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.1e-37 159.8 88 84.1
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 8.9e-29 131.7 265 31.7
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 2.6e-28 130.2 239 32.6
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 6.0e-25 119.0 83 71.1
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 9.5e-23 111.7 275 25.5
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 9.5e-23 111.7 134 52.2
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 4.6e-17 92.8 178 28.7
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 3.4e-12 76.6 41 87.8
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 5.4e-10 69.3 83 49.4
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 4.6e-09 66.2 198 30.8


User provided reference genes

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