Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.7e-216 755.7 381 100.0
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 2.5e-63 246.9 133 95.5
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 2.5e-63 246.9 133 95.5
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 2.5e-63 246.9 133 95.5
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 2.5e-63 246.9 133 95.5
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 1.2e-54 218.0 134 82.1
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 1.2e-54 218.0 134 82.1
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 8.1e-54 215.3 134 81.3
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 8.9e-53 211.8 141 78.0
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 2.0e-52 210.7 133 80.5
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.0e-52 210.7 134 80.6
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 7.6e-52 208.8 134 80.6
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 7.6e-52 208.8 134 80.6
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 7.6e-52 208.8 134 80.6
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.9e-52 208.4 134 79.1
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 2.2e-51 207.2 134 78.4
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 3.7e-51 206.5 134 79.9
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 3.7e-51 206.5 134 79.9
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 4.9e-51 206.1 134 79.1
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 4.6e-49 199.5 133 78.2
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 4.6e-49 199.5 133 77.4
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 3.6e-46 189.9 132 75.8
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 3.6e-46 189.9 132 75.8
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 1.4e-45 188.0 134 73.9
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.2e-44 184.9 134 71.6
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.2e-44 184.9 134 71.6
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.5e-44 184.5 130 73.1
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 2.0e-44 184.1 156 66.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 5.8e-44 182.6 134 70.9
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 5.8e-44 182.6 134 70.9
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 5.8e-44 182.6 134 70.9
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 5.8e-44 182.6 134 70.9
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 5.8e-44 182.6 134 70.9
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.7e-43 181.0 134 70.1
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 9.3e-42 175.3 136 66.9
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 6.0e-41 172.6 134 66.4
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.6e-40 169.1 131 68.7
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-39 167.5 115 73.0
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.7e-35 154.5 74 100.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 7.1e-34 149.1 116 69.0
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 1.7e-32 144.4 160 51.9
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 9.6e-31 138.7 74 85.1
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 2.8e-30 137.1 74 85.1
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 4.0e-29 133.3 74 83.8
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.9e-29 132.5 92 70.7
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.9e-29 132.5 92 70.7
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 2.6e-28 130.6 113 65.5
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.8e-28 129.4 98 63.3
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 4.2e-26 123.2 134 56.0
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 2.7e-25 120.6 134 53.7
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.9e-23 114.4 72 77.8
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 2.4e-21 107.5 87 67.8
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.2e-20 105.1 76 67.1
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 2.0e-20 104.4 72 69.4
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 3.4e-20 103.6 74 68.9
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 3.4e-20 103.6 56 82.1
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 6.5e-19 99.4 57 80.7
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-18 98.6 74 64.9
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 9.3e-18 95.5 119 51.3
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 6.0e-17 92.8 71 63.4
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 3.7e-14 83.6 51 74.5
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-13 82.0 85 47.1
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-13 81.6 64 62.5
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 5.0e-11 73.2 74 59.5
Dinv06683 Davidia involucrata HOM05D016373 ORTHO05D016276 5.0e-11 73.2 36 94.4
Nitab4.5_0003481g0020 Nicotiana tabacum HOM05D009456 ORTHO05D011674 4.2e-10 70.1 36 88.9
Nitab4.5_0008059g0010 Nicotiana tabacum HOM05D016373 ORTHO05D016276 4.2e-10 70.1 36 91.7
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 5.5e-10 69.7 50 64.0
Nitab4.5_0000031g0130 Nicotiana tabacum HOM05D016373 ORTHO05D016276 7.2e-10 69.3 36 88.9
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 7.2e-10 69.3 120 40.0
Oeu030614.1 Olea europaea HOM05D024339 ORTHO05D016276 4.6e-09 66.6 36 91.7
Oeu041254.1 Olea europaea HOM05D024339 ORTHO05D016276 1.0e-08 65.5 36 88.9
Nitab4.5_0000172g2010 Nicotiana tabacum HOM05D016373 ORTHO05D016276 1.3e-08 65.1 36 80.6
Nitab4.5_0001152g0120 Nicotiana tabacum HOM05D016373 ORTHO05D016276 2.3e-08 64.3 36 86.1


User provided reference genes

Program Settings