Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold646G53321 Striga asiatica HOM05D003753 ORTHO05D005081 4.6e-76 287.7 138 100.0
SGA_v2.0_scaffold119G32713 Striga asiatica HOM05D003753 ORTHO05D005081 3.5e-55 218.4 129 85.3
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 2.3e-51 205.7 129 75.2
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 8.5e-46 187.2 127 69.3
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 6.1e-44 181.0 126 69.0
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 7.5e-42 174.1 127 67.7
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 9.8e-42 173.7 129 65.9
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 6.3e-41 171.0 129 64.3
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 6.3e-41 171.0 129 64.3
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 8.3e-41 170.6 129 64.3
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 1.1e-40 170.2 128 63.3
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 1.4e-40 169.9 137 59.1
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.8e-40 169.5 126 64.3
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 1.8e-40 169.5 129 62.8
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 2.4e-40 169.1 128 62.5
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 2.4e-40 169.1 128 62.5
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 1.2e-39 166.8 129 64.3
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 1.6e-39 166.4 128 63.3
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.0e-39 166.0 129 64.3
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 2.7e-39 165.6 129 61.2
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 2.7e-39 165.6 129 61.2
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 4.5e-39 164.9 126 61.9
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 5.9e-39 164.5 129 61.2
SalBow6G3809 Salvia bowleyana HOM05D003753 ORTHO05D005081 5.9e-39 164.5 127 63.0
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 7.7e-39 164.1 129 62.8
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 7.7e-39 164.1 129 62.8
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 1.0e-38 163.7 127 62.2
Atru.chr7.1581 Acer truncatum HOM05D003753 ORTHO05D005081 1.7e-38 162.9 129 62.0
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 1.7e-38 162.9 132 61.4
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 1.7e-38 162.9 137 58.4
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 1.7e-38 162.9 129 63.6
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 1.7e-38 162.9 127 59.8
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 2.2e-38 162.5 129 62.0
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 2.2e-38 162.5 127 61.4
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 3.8e-38 161.8 127 62.2
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 5.0e-38 161.4 125 60.8
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 6.5e-38 161.0 137 56.9
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.1e-37 160.2 129 61.2
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 1.1e-37 160.2 127 59.8
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 1.1e-37 160.2 129 60.5
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 1.5e-37 159.8 137 56.9
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 1.9e-37 159.5 137 56.2
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 2.5e-37 159.1 128 60.9
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 3.2e-37 158.7 129 60.5
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 3.2e-37 158.7 128 60.2
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 3.2e-37 158.7 129 62.8
Lj7A675G38 Lonicera japonica HOM05D003753 ORTHO05D005081 4.2e-37 158.3 114 65.8
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 4.2e-37 158.3 129 61.2
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 7.2e-37 157.5 128 59.4
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 7.2e-37 157.5 128 57.8
Solyc05g014090.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 7.2e-37 157.5 129 59.7
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 9.4e-37 157.1 129 59.7
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 9.4e-37 157.1 129 59.7
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 1.2e-36 156.8 119 64.7
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 2.1e-36 156.0 129 59.7
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.7e-36 155.6 125 60.0
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 3.6e-36 155.2 128 57.8
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 6.1e-36 154.5 129 58.9
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 6.1e-36 154.5 125 59.2
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 6.1e-36 154.5 130 60.0
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 8.0e-36 154.1 135 57.8
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 8.0e-36 154.1 125 59.2
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 8.0e-36 154.1 125 59.2
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 8.0e-36 154.1 125 59.2
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.0e-35 153.7 125 59.2
TAR626G1816 Trochodendron aralioides HOM05D003753 ORTHO05D005081 1.0e-35 153.7 129 57.4
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 1.4e-35 153.3 127 60.6
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 1.8e-35 152.9 126 58.7
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 3.0e-35 152.1 127 61.4
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 3.0e-35 152.1 128 58.6
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 3.0e-35 152.1 129 59.7
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 4.0e-35 151.8 125 57.6
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 4.0e-35 151.8 128 59.4
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 4.0e-35 151.8 126 57.9
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 4.0e-35 151.8 135 55.6
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 4.0e-35 151.8 128 55.5
Psat7g005120 Pisum sativum HOM05D003753 ORTHO05D005081 4.0e-35 151.8 134 54.5
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 4.0e-35 151.8 128 57.0
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 5.2e-35 151.4 137 54.7
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 5.2e-35 151.4 137 53.3
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 6.8e-35 151.0 135 58.5
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 6.8e-35 151.0 129 60.5
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 1.2e-34 150.2 135 57.8
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 1.2e-34 150.2 126 56.3
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 1.5e-34 149.8 128 56.2
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 1.5e-34 149.8 128 57.8
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 2.0e-34 149.4 128 60.9
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 2.0e-34 149.4 124 58.1
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 2.0e-34 149.4 126 55.6
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 2.6e-34 149.1 136 57.4
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 3.4e-34 148.7 128 56.2
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 4.4e-34 148.3 128 60.9
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 4.4e-34 148.3 129 56.6
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 7.5e-34 147.5 128 55.5
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 9.8e-34 147.1 150 50.7
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 9.8e-34 147.1 134 55.2
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 1.3e-33 146.7 127 59.8
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 1.3e-33 146.7 137 53.3
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 1.7e-33 146.4 129 55.8
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 1.7e-33 146.4 137 52.6
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 1.7e-33 146.4 129 55.8
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 2.2e-33 146.0 118 58.5
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 2.2e-33 146.0 125 56.8
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 2.2e-33 146.0 126 54.0
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 2.8e-33 145.6 126 60.3
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 2.8e-33 145.6 126 60.3
BcaC06g36597 Brassica carinata HOM05D003753 ORTHO05D005081 3.7e-33 145.2 128 57.8
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 3.7e-33 145.2 127 59.1
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 3.7e-33 145.2 127 59.1
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 3.7e-33 145.2 127 59.1
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 3.7e-33 145.2 127 59.1
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 3.7e-33 145.2 127 59.1
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 3.7e-33 145.2 117 59.0
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 4.9e-33 144.8 127 55.1
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.4e-32 143.3 176 44.9
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 5.4e-32 141.4 136 54.4
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 7.0e-32 141.0 128 55.5
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 7.0e-32 141.0 128 53.1
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 7.0e-32 141.0 176 44.3
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 9.1e-32 140.6 115 58.3
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 3.5e-31 138.7 126 54.8
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 7.7e-31 137.5 116 56.0
Sopen05g016940 Solanum pennellii HOM05D003753 ORTHO05D005081 7.7e-31 137.5 114 57.9
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 1.3e-30 136.7 126 54.0
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 5.0e-30 134.8 129 51.2
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 5.0e-30 134.8 136 51.5
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 6.6e-30 134.4 186 40.3
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 1.1e-29 133.7 130 52.3
PGSC0003DMG400025556 Solanum tuberosum HOM05D003753 ORTHO05D005081 1.1e-29 133.7 109 61.5
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 5.5e-29 131.3 129 51.2
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 1.2e-28 130.2 127 49.6
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 1.6e-28 129.8 116 57.8
BcaC05g28541 Brassica carinata HOM05D003753 ORTHO05D005081 2.1e-28 129.4 136 52.9
C07p02380 Brassica napus HOM05D003753 ORTHO05D005081 6.1e-28 127.9 123 54.5
BolC7t40644H Brassica oleracea HOM05D003753 ORTHO05D005081 6.1e-28 127.9 123 54.5
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 8.0e-28 127.5 115 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2490 Anthoceros agrestis HOM05D003753 ORTHO05D005081 1.0e-27 127.1 127 45.7
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 4.0e-27 125.2 141 48.9
SHI20703 Sapria himalayana HOM05D003753 ORTHO05D005081 8.9e-27 124.0 106 51.9
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 1.2e-26 123.6 131 47.3
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 1.5e-26 123.2 132 46.2
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 5.7e-26 121.3 117 51.3
SGA_v2.0_scaffold85G26676 Striga asiatica HOM05D000860 ORTHO05D003230 9.2e-24 114.0 92 69.6
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 2.0e-23 112.8 95 55.8
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.0e-23 112.8 98 54.1
Sopen05g009100 Solanum pennellii HOM05D003753 ORTHO05D005081 2.0e-23 112.8 92 56.5
arahy.Tifrunner.gnm1.ann1.WXAY6T Arachis hypogaea HOM05D003753 ORTHO05D005081 7.8e-23 110.9 129 51.2
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 1.7e-22 109.8 94 53.2
Hma1.2p1_0798F.1_g219790 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 1.9e-21 106.3 124 48.4
PRCOL_00005408 Prasinoderma coloniale HOM05D003753 ORTHO05D005081 7.3e-21 104.4 141 42.6
MBI06_g38946_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 4.7e-20 101.7 109 46.8
MCO09G725 Micromonas commoda HOM05D003753 ORTHO05D005081 1.0e-19 100.5 132 42.4
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 5.2e-19 98.2 93 51.6
Hma1.2p1_1593F.1_g292630 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 5.2e-19 98.2 89 50.6
BcaB03g16742 Brassica carinata HOM05D003753 ORTHO05D005081 1.5e-18 96.7 134 44.8
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 2.2e-17 92.8 89 56.2
SMO270G0139 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 4.9e-17 91.7 123 42.3
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 4.3e-13 78.6 136 36.0
CSS0034365 Camellia sinensis var. sinensis HOM05D000288 ORTHO05D000173 1.5e-10 70.1 69 47.8
CSS0049435 Camellia sinensis var. sinensis HOM05D000288 ORTHO05D000173 2.0e-10 69.7 69 47.8
SGA_v2.0_scaffold304G47897 Striga asiatica HOM05D003753 ORTHO05D404371 5.4e-08 61.6 56 58.9
FAN02G0879 Fragaria x ananassa HOM05D003753 ORTHO05D005081 7.1e-08 61.2 34 79.4
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 1.3e-06 57.0 111 36.0


User provided reference genes

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