Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15991 Striga asiatica HOM05D021674 ORTHO05D404867 7.5e-115 417.2 205 100.0
SGA_v2.0_scaffold63G21765 Striga asiatica HOM05D021674 ORTHO05D406589 7.5e-115 417.2 205 100.0
SGA_v2.0_scaffold347G49569 Striga asiatica HOM05D021674 ORTHO05D402548 1.4e-65 253.4 165 81.8
SGA_v2.0_scaffold30G12386 Striga asiatica HOM05D021674 ORTHO05D402565 2.2e-29 133.3 157 51.6
SGA_v2.0_scaffold88G27193 Striga asiatica HOM05D021674 ORTHO05D400168 8.0e-24 114.8 208 42.8
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 2.8e-16 89.7 60 76.7
unitig_32.g11227 Utricularia gibba HOM05D000032 ORTHO05D006669 7.8e-11 71.6 61 60.7
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 1.0e-10 71.2 60 58.3
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 1.7e-10 70.5 60 58.3
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 1.7e-10 70.5 60 56.7
Sed0016675 Sechium edule HOM05D000032 ORTHO05D006669 2.9e-10 69.7 60 56.7
SGA_v2.0_scaffold8G04643 Striga asiatica HOM05D021674 ORTHO05D399068 1.5e-09 67.4 139 40.3
vmacro07575 Vaccinium macrocarpon HOM05D000032 ORTHO05D006669 1.5e-09 67.4 65 55.4
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 1.9e-09 67.0 61 59.0
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 1.9e-09 67.0 59 55.9
ECA240G2120 Erigeron canadensis HOM05D000032 ORTHO05D006669 2.5e-09 66.6 62 54.8
Duzib093G1385 Durio zibethinus HOM05D000032 ORTHO05D006669 3.3e-09 66.2 59 54.2
HanXRQChr16g0529991 Helianthus annuus HOM05D000032 ORTHO05D006669 3.3e-09 66.2 62 54.8
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 3.3e-09 66.2 61 57.4
GSVIVG01009935001 Vitis vinifera HOM05D000032 ORTHO05D006669 5.6e-09 65.5 60 55.0
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 7.3e-09 65.1 61 57.4
ECA238G1643 Erigeron canadensis HOM05D000032 ORTHO05D006669 7.3e-09 65.1 62 53.2
PGSC0003DMG400009873 Solanum tuberosum HOM05D000032 ORTHO05D006669 7.3e-09 65.1 63 57.1
Cpa.g.sc29.167 Carica papaya HOM05D000032 ORTHO05D006669 9.5e-09 64.7 60 55.0
Rhsim06G0019900 Rhododendron simsii HOM05D000032 ORTHO05D006669 1.6e-08 63.9 61 55.7
Aa31LG2G12780 Aethionema arabicum HOM05D000032 ORTHO05D006669 2.1e-08 63.5 62 58.1
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 2.1e-08 63.5 60 55.0
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 2.8e-08 63.2 60 53.3
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 3.6e-08 62.8 60 53.3
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 3.6e-08 62.8 60 53.3
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 4.7e-08 62.4 61 55.7
FAN20G2235 Fragaria x ananassa HOM05D000032 ORTHO05D006669 4.7e-08 62.4 61 55.7
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 4.7e-08 62.4 61 55.7
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 4.7e-08 62.4 61 57.4
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 6.1e-08 62.0 62 54.8
Manes.18G012300 Manihot esculenta HOM05D000032 ORTHO05D006669 6.1e-08 62.0 60 51.7
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 8.0e-08 61.6 60 51.7
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 8.0e-08 61.6 60 53.3
MSTRG.25259 Avicennia marina HOM05D000032 ORTHO05D006669 1.0e-07 61.2 51 68.6
CANSAT64G1040 Cannabis sativa HOM05D000032 ORTHO05D006669 1.0e-07 61.2 61 55.7
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 1.0e-07 61.2 60 51.7
FAN15G3432 Fragaria x ananassa HOM05D000032 ORTHO05D006669 1.4e-07 60.8 61 54.1
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 1.8e-07 60.5 59 50.8
Hma1.2p1_0274F.1_g110360 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 1.8e-07 60.5 61 55.7
Hma1.2p1_0274F.1_g110370 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 1.8e-07 60.5 61 55.7
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 1.8e-07 60.5 61 55.7
Solyc04g081580.4 Solanum lycopersicum HOM05D000032 ORTHO05D006669 1.8e-07 60.5 63 57.1
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 1.8e-07 60.5 63 57.1
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 2.3e-07 60.1 60 53.3
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 2.3e-07 60.1 61 54.1
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 3.0e-07 59.7 62 50.0
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 3.0e-07 59.7 59 50.8
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 3.0e-07 59.7 60 51.7
THA.LOC104815496 Tarenaya hassleriana HOM05D000032 ORTHO05D006669 3.0e-07 59.7 67 53.7
BcaC07g38004 Brassica carinata HOM05D000032 ORTHO05D006669 4.0e-07 59.3 62 53.2
A08p12610 Brassica napus HOM05D000032 ORTHO05D006669 4.0e-07 59.3 62 53.2
BolC8t48384H Brassica oleracea HOM05D000032 ORTHO05D006669 4.0e-07 59.3 62 53.2
BraA08t33251Z Brassica rapa HOM05D000032 ORTHO05D006669 4.0e-07 59.3 62 53.2
Gohir.D05G188600 Gossypium hirsutum HOM05D000032 ORTHO05D006669 5.2e-07 58.9 59 50.8
Gorai.009G193900 Gossypium raimondii HOM05D000032 ORTHO05D006669 5.2e-07 58.9 59 50.8
AUR62041487 Chenopodium quinoa HOM05D000032 ORTHO05D006669 6.8e-07 58.5 61 55.7
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 6.8e-07 58.5 60 50.0
EL10Ac1g02170 Beta vulgaris HOM05D000032 ORTHO05D006669 8.9e-07 58.2 63 57.1
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 8.9e-07 58.2 61 54.1
Sc15g0004880 Simmondsia chinensis HOM05D000032 ORTHO05D006669 8.9e-07 58.2 59 50.8
Ah.00g000290 Amaranthus hybridus HOM05D000032 ORTHO05D006669 1.2e-06 57.8 55 56.4
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 1.2e-06 57.8 50 62.0
Hund01599 Selenicereus undatus HOM05D000032 ORTHO05D006669 1.5e-06 57.4 61 52.5
AUR62040549 Chenopodium quinoa HOM05D000032 ORTHO05D006669 2.6e-06 56.6 61 54.1
Lsat_1_v5_gn_8_10200 Lactuca sativa HOM05D000032 ORTHO05D006669 2.6e-06 56.6 53 58.5
Thhalv10024452m.g Eutrema salsugineum HOM05D000032 ORTHO05D006669 4.4e-06 55.8 62 51.6
AT4G16630 Arabidopsis thaliana HOM05D000032 ORTHO05D006669 5.7e-06 55.5 62 50.0
BraA01t01995Z Brassica rapa HOM05D000032 ORTHO05D006669 5.7e-06 55.5 66 47.0
CARHR223130 Cardamine hirsuta HOM05D000032 ORTHO05D006669 5.7e-06 55.5 62 53.2
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 5.7e-06 55.5 60 51.7
Medtr2g041140 Medicago truncatula HOM05D000032 ORTHO05D006669 9.8e-06 54.7 60 50.0


User provided reference genes

Program Settings