Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 2.6e-236 821.6 396 100.0
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 4.5e-116 422.2 368 56.5
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 2.0e-103 380.2 362 53.0
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 7.7e-100 368.2 363 53.4
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.2e-97 360.9 372 53.5
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 3.2e-85 319.7 365 47.4
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.3e-83 314.3 357 50.4
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 3.6e-81 306.2 369 48.2
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 5.2e-80 302.4 371 45.3
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 6.8e-80 302.0 372 44.9
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.6e-79 300.1 366 45.6
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.8e-79 298.9 363 45.5
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.3e-78 297.7 363 45.2
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.3e-78 297.7 366 45.1
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.1e-77 294.7 363 43.5
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.1e-77 294.7 367 44.7
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.1e-76 290.4 366 45.1
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 4.6e-76 289.3 369 43.6
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 6.0e-76 288.9 367 43.6
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.3e-75 287.7 363 47.9
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 4.3e-74 282.7 357 43.1
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 5.6e-74 282.3 372 44.9
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.6e-73 279.6 368 42.7
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 3.6e-73 279.6 365 43.6
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.4e-72 277.7 373 42.9
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.3e-72 276.9 367 45.5
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 3.1e-72 276.6 372 46.0
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.2e-71 274.6 370 43.2
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.2e-70 270.4 366 43.2
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 8.3e-70 268.5 371 44.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.1e-69 268.1 360 44.7
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.9e-69 267.3 373 42.4
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 3.2e-69 266.5 357 44.3
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.1e-69 266.2 359 42.1
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.1e-69 266.2 377 41.6
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 5.4e-69 265.8 359 41.8
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 5.4e-69 265.8 375 42.1
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 1.2e-68 264.6 355 43.1
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.7e-68 263.5 363 42.7
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.7e-68 263.5 369 43.4
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 6.0e-68 262.3 286 47.6
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 6.0e-68 262.3 363 43.8
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 7.8e-68 261.9 370 43.0
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.3e-67 261.2 369 43.4
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.7e-67 260.8 371 44.2
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 3.0e-67 260.0 359 44.6
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 6.6e-67 258.8 379 41.4
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.6e-67 258.5 368 40.2
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.6e-67 258.5 362 40.6
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 8.6e-67 258.5 359 43.2
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.1e-66 258.1 368 41.0
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-66 257.7 362 40.6
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 3.3e-66 256.5 364 40.9
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.3e-66 256.5 376 42.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 7.3e-66 255.4 357 41.2
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.2e-65 254.6 363 41.6
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.8e-65 253.4 367 40.9
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 3.6e-65 253.1 334 43.7
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.7e-65 252.7 366 40.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 4.7e-65 252.7 370 42.4
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 8.1e-65 251.9 361 41.0
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.1e-64 251.5 368 39.4
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.1e-64 251.5 361 41.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.8e-64 250.8 375 42.4
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 2.4e-64 250.4 376 40.2
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 3.1e-64 250.0 360 42.5
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.0e-64 249.6 373 40.5
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 6.8e-64 248.8 369 43.1
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.6e-63 246.9 373 39.9
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.8e-63 245.7 366 39.6
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 7.6e-63 245.4 370 41.6
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 9.9e-63 245.0 366 40.4
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.3e-62 244.6 376 41.2
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.7e-62 244.2 377 40.6
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.7e-62 244.2 362 40.6
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 2.2e-62 243.8 370 39.2
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.8e-62 243.0 308 42.5
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 4.9e-62 242.7 371 41.2
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 6.4e-62 242.3 373 40.2
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 8.4e-62 241.9 371 41.5
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.1e-61 241.5 371 41.0
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.6e-60 237.7 372 38.7
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 6.0e-60 235.7 371 40.4
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 6.6e-59 232.3 377 37.7
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 9.6e-58 228.4 376 38.0
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 2.8e-57 226.9 402 37.3
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.8e-56 224.2 359 38.2
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-55 221.5 365 37.5
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 1.7e-54 217.6 361 37.7
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 6.4e-54 215.7 363 38.8
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 8.4e-54 215.3 363 38.8
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 8.4e-54 215.3 386 36.5
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.4e-53 214.5 365 39.2
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 1.4e-53 214.5 365 39.2
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.9e-53 214.2 265 41.5
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.9e-53 214.2 369 37.7
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 3.2e-53 213.4 359 36.5
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 9.3e-53 211.8 357 38.1
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.2e-52 211.5 357 38.9
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.5e-52 209.9 364 35.2
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 6.0e-52 209.1 371 36.4
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 6.0e-52 209.1 371 36.4
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 7.8e-52 208.8 366 38.0
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 1.0e-51 208.4 371 35.8
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.3e-51 208.0 240 46.2
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.7e-51 207.6 369 34.7
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 5.1e-51 206.1 367 34.9
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 5.6e-50 202.6 375 35.7
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-49 201.1 232 48.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 6.2e-49 199.1 350 38.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 8.1e-49 198.7 368 36.1
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.4e-48 198.0 372 35.8
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 1.4e-48 198.0 370 35.1
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.4e-48 197.2 375 37.1
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 3.1e-48 196.8 367 37.6
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.4e-47 193.4 295 36.6
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.3e-46 191.4 370 34.9
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.1e-45 188.3 375 36.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 3.2e-45 186.8 366 33.3
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.6e-44 184.5 265 38.5
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 5.1e-43 179.5 347 35.4
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.1e-42 178.3 377 32.9
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.5e-42 177.9 256 43.0
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 9.6e-42 175.3 367 31.3
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 4.8e-41 172.9 359 33.1
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 1.2e-39 168.3 361 33.5
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 2.6e-39 167.2 264 35.6
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 7.6e-39 165.6 288 35.1
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 6.7e-35 152.5 250 39.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 2.9e-30 137.1 224 37.1
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 3.8e-30 136.7 107 57.0
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 3.9e-27 126.7 364 26.9
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 8.7e-27 125.6 222 35.6
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.3e-26 123.6 291 33.0
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 4.1e-24 116.7 388 28.4
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.0e-24 115.5 202 37.6
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-23 115.2 183 37.7
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.9e-21 107.8 337 28.8
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 7.2e-21 105.9 362 28.5
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 8.8e-19 99.0 297 27.9
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 2.0e-18 97.8 329 28.9
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 2.5e-18 97.4 325 28.9
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 4.3e-18 96.7 290 29.7
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.3e-17 95.1 198 31.8
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 1.7e-17 94.7 333 28.8
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.7e-17 94.7 332 28.0
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.7e-17 94.7 332 28.0
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 2.2e-17 94.4 187 33.2
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 2.2e-17 94.4 95 48.4
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 2.8e-17 94.0 334 28.1
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 1.4e-16 91.7 167 37.7
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 1.8e-16 91.3 289 28.4
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 2.4e-16 90.9 346 26.9
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 6.9e-16 89.4 334 27.5
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.3e-14 85.1 214 29.9
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 8.5e-14 82.4 284 26.4
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 7.2e-13 79.3 341 27.0
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 1.2e-12 78.6 86 46.5
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.1e-12 77.8 243 27.6
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 3.9e-11 73.6 310 24.2
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.1e-10 72.0 75 48.0
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.5e-10 71.6 344 24.4
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.4e-10 70.1 88 38.6
SGA_v2.0_scaffold268G46206 Striga asiatica HOM05D004907 ORTHO05D005707 2.4e-08 64.3 33 84.8
SEGI_19761 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 2.0e-07 61.2 53 49.1
SEGI_28857 Sequoiadendron giganteum HOM05D041656 ORTHO05D009873 2.0e-07 61.2 53 49.1
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 2.0e-07 61.2 103 40.8
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.7e-06 58.2 128 30.5
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.9e-06 57.4 305 24.9


User provided reference genes

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