Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 2.1e-146 522.3 262 100.0
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 4.1e-73 278.9 259 54.8
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 2.6e-72 276.2 255 56.1
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 1.0e-71 274.2 263 51.3
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 1.7e-71 273.5 244 55.3
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 1.8e-68 263.5 244 54.9
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 1.4e-65 253.8 256 52.7
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 8.0e-61 238.0 260 47.3
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 5.2e-60 235.3 265 45.7
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 8.8e-60 234.6 256 51.2
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 8.8e-60 234.6 236 52.1
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 4.1e-57 225.7 272 45.6
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 2.7e-56 223.0 201 53.7
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 3.5e-56 222.6 201 54.7
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 2.3e-55 219.9 205 53.7
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 2.3e-55 219.9 205 53.7
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 2.9e-55 219.5 211 52.1
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 2.5e-54 216.5 202 53.5
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 2.5e-54 216.5 203 53.7
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 2.5e-54 216.5 209 53.1
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 7.2e-54 214.9 212 51.9
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 9.5e-54 214.5 212 51.9
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 9.5e-54 214.5 254 46.1
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 1.2e-53 214.2 221 48.0
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 1.6e-53 213.8 212 53.8
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 1.0e-52 211.1 261 45.6
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 1.4e-52 210.7 266 45.9
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 1.4e-52 210.7 206 51.5
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 1.8e-52 210.3 205 50.7
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 3.0e-52 209.5 217 50.7
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 4.0e-52 209.1 202 50.5
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 6.8e-52 208.4 263 43.3
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 8.9e-52 208.0 216 47.7
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 2.6e-51 206.5 201 50.2
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 2.6e-51 206.5 205 49.8
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 7.5e-51 204.9 214 47.7
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 1.3e-50 204.1 201 51.2
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 1.7e-50 203.8 196 52.0
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 2.8e-50 203.0 201 50.7
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 3.7e-50 202.6 202 49.5
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 3.7e-50 202.6 198 50.5
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 3.7e-50 202.6 202 50.0
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 3.7e-50 202.6 199 49.7
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 4.9e-50 202.2 216 47.2
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 6.3e-50 201.8 202 50.5
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 6.3e-50 201.8 216 47.7
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 6.3e-50 201.8 205 49.8
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 8.3e-50 201.4 199 49.2
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.1e-49 201.1 202 49.5
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 1.1e-49 201.1 220 46.4
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 1.8e-49 200.3 201 50.2
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 5.4e-49 198.7 241 43.2
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 7.0e-49 198.4 205 49.8
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 7.0e-49 198.4 205 48.8
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 9.2e-49 198.0 205 48.3
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.6e-48 197.2 212 47.2
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 5.9e-48 195.3 201 48.3
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 5.9e-48 195.3 221 47.5
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 1.3e-47 194.1 219 47.0
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 1.7e-47 193.7 205 49.8
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 1.7e-47 193.7 198 49.5
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 3.9e-47 192.6 198 47.0
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 6.6e-47 191.8 214 46.7
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 8.6e-47 191.4 168 54.8
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 8.6e-47 191.4 199 47.7
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 1.5e-46 190.7 198 49.0
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.9e-46 190.3 198 48.0
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.5e-46 189.9 198 49.0
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 3.3e-46 189.5 201 46.8
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 3.3e-46 189.5 268 39.9
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 5.6e-46 188.7 202 47.0
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 5.6e-46 188.7 212 46.2
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 7.3e-46 188.3 203 47.3
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 1.6e-45 187.2 238 43.7
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 1.6e-45 187.2 220 46.8
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 3.6e-45 186.0 212 45.8
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 3.6e-45 186.0 203 46.3
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 6.1e-45 185.3 198 47.5
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 8.0e-45 184.9 229 45.4
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 1.0e-44 184.5 207 46.4
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 1.0e-44 184.5 201 46.3
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 1.4e-44 184.1 201 46.8
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 2.3e-44 183.3 198 46.5
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 3.1e-44 183.0 185 47.6
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 8.9e-44 181.4 201 44.3
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 8.9e-44 181.4 201 44.3
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 2.0e-43 180.3 242 40.9
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 7.5e-43 178.3 198 44.9
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 9.8e-43 177.9 184 48.4
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 1.3e-42 177.6 198 44.9
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 1.1e-41 174.5 219 43.8
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 1.1e-41 174.5 165 53.3
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 1.9e-41 173.7 199 44.7
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 5.4e-41 172.2 202 42.6
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 5.4e-41 172.2 211 42.7
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 1.2e-40 171.0 217 41.9
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 2.0e-40 170.2 169 47.3
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 2.7e-40 169.9 195 42.6
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 7.8e-40 168.3 197 48.2
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 1.3e-39 167.5 169 49.1
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 1.9e-38 163.7 210 44.3
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 9.5e-38 161.4 200 44.0
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 3.6e-37 159.5 210 39.0
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 1.4e-36 157.5 204 38.7
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 2.3e-28 130.2 207 35.7
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 9.9e-27 124.8 147 46.3
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 1.7e-26 124.0 158 44.3
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 1.4e-25 120.9 205 38.5
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 7.8e-24 115.2 161 41.6
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 1.9e-22 110.5 140 40.7
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 6.6e-15 85.5 162 31.5
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 8.7e-15 85.1 157 34.4
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 8.1e-13 78.6 93 44.1
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 4.0e-12 76.3 69 59.4
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 5.3e-12 75.9 103 42.7
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 7.1e-09 65.5 63 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 9.3e-09 65.1 135 29.6
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 9.3e-09 65.1 71 47.9
Lsat_1_v5_gn_7_84341 Lactuca sativa HOM05D005759 ORTHO05D007172 1.0e-07 61.6 121 34.7
FAN01G1973 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.3e-07 60.5 101 40.6
Nitab4.5_0000543g0180 Nicotiana tabacum HOM05D000032 ORTHO05D007444 3.0e-07 60.1 185 24.9
THA.LOC104798505 Tarenaya hassleriana HOM05D000032 ORTHO05D007444 2.5e-06 57.0 167 28.1
Peaxi162Scf00879g00110 Petunia axillaris HOM05D000032 ORTHO05D007444 3.3e-06 56.6 209 25.4
Solyc08g076200.4 Solanum lycopersicum HOM05D000032 ORTHO05D007444 4.3e-06 56.2 172 25.6
Sopen08g024840 Solanum pennellii HOM05D000032 ORTHO05D007444 5.6e-06 55.8 172 25.6
PGSC0003DMG400009295 Solanum tuberosum HOM05D000032 ORTHO05D007444 5.6e-06 55.8 172 25.6
Ca_11766_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 7.3e-06 55.5 37 67.6


User provided reference genes

Program Settings