Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold61G21224 Striga asiatica HOM05D001874 ORTHO05D403525 9.5e-86 320.1 155 100.0
SGA_v2.0_scaffold223G42829 Striga asiatica HOM05D001874 ORTHO05D002166 5.5e-09 65.1 41 75.6
HanXRQChr07g0197981 Helianthus annuus HOM05D001874 ORTHO05D002166 1.2e-08 63.9 41 73.2
Migut.M01864 Erythranthe guttata HOM05D001874 ORTHO05D002166 1.6e-08 63.5 40 77.5
SalBow8G1324 Salvia bowleyana HOM05D001874 ORTHO05D002166 3.6e-08 62.4 40 75.0
Lj1g0026985 Lotus japonicus HOM05D001874 ORTHO05D002166 4.6e-08 62.0 41 70.7
Manes.04G096000 Manihot esculenta HOM05D001874 ORTHO05D002166 6.1e-08 61.6 41 68.3
Nitab4.5_0009395g0010 Nicotiana tabacum HOM05D001874 ORTHO05D002166 6.1e-08 61.6 40 75.0
Peaxi162Scf00827g00032 Petunia axillaris HOM05D001874 ORTHO05D002166 6.1e-08 61.6 40 75.0
Ciclev10015815m.g Citrus clementina HOM05D001874 ORTHO05D002166 7.9e-08 61.2 40 72.5
Nn3g16189 Nelumbo nucifera HOM05D001874 ORTHO05D002166 7.9e-08 61.2 40 72.5
Aqoxy5G02949 Aquilegia oxysepala HOM05D001874 ORTHO05D002166 1.0e-07 60.8 40 70.0
GSVIVG01032940001 Vitis vinifera HOM05D001874 ORTHO05D002166 1.0e-07 60.8 39 74.4
PGSC0003DMG400009907 Solanum tuberosum HOM05D001874 ORTHO05D002166 1.4e-07 60.5 40 72.5
arahy.Tifrunner.gnm1.ann1.KT7N93 Arachis hypogaea HOM05D001874 ORTHO05D002166 1.8e-07 60.1 40 70.0
arahy.Tifrunner.gnm1.ann1.RBX16R Arachis hypogaea HOM05D001874 ORTHO05D002166 1.8e-07 60.1 40 70.0
ClCG05G012420 Citrullus lanatus HOM05D001874 ORTHO05D002166 2.3e-07 59.7 40 70.0
MELO3C014751.2 Cucumis melo HOM05D001874 ORTHO05D002166 2.3e-07 59.7 40 70.0
CsaV3_3G020120 Cucumis sativus L. HOM05D001874 ORTHO05D002166 2.3e-07 59.7 40 70.0
Oeu040092.1 Olea europaea HOM05D001874 ORTHO05D002166 2.3e-07 59.7 41 70.7
Sed0012223 Sechium edule HOM05D001874 ORTHO05D002166 2.3e-07 59.7 40 70.0
Cfa007129 Carpinus fangiana HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
CiPaw.03G000100 Carya illinoinensis HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Haze_14992 Corylus avellana HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Dinv25609 Davidia involucrata HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
FvH4_6g54470 Fragaria vesca HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
FAN02G2214 Fragaria x ananassa HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
FAN05G5250 Fragaria x ananassa HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
FAN09G4781 Fragaria x ananassa HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
FAN14G4833 Fragaria x ananassa HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Glyma.16G044800 Glycine max HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Glyma.19G106900 Glycine max HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Lsat_1_v5_gn_2_95200 Lactuca sativa HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Lalb_Chr14g0364201 Lupinus albus HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Lalb_Chr24g0403031 Lupinus albus HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 72.5
MD09G1000600 Malus domestica HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
MD09G1142200 Malus domestica HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Manes.11G072300 Manihot esculenta HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
PSO478G5161 Papaver somniferum HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Phvul.001G098000 Phaseolus vulgaris HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Potri.014G140700 Populus trichocarpa HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Prupe.3G315600 Prunus persica HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
PGR042G1329 Punica granatum HOM05D001874 ORTHO05D002166 3.0e-07 59.3 41 68.3
RcHm_v2.0_Chr2g0176751 Rosa chinensis HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Sabra14G0106100 Salix brachista HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Sc03g0005430 Simmondsia chinensis HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 72.5
THA.LOC104805293 Tarenaya hassleriana HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
TAR636G0637 Trochodendron aralioides HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
VMungo1383G1741 Vigna mungo HOM05D001874 ORTHO05D002166 3.0e-07 59.3 40 70.0
Medtr7g084810 Medicago truncatula HOM05D001874 ORTHO05D002166 3.9e-07 58.9 40 67.5
Rhsim08G0037100 Rhododendron simsii HOM05D001874 ORTHO05D002166 3.9e-07 58.9 41 68.3
TAR374G1430 Trochodendron aralioides HOM05D001874 ORTHO05D002166 3.9e-07 58.9 40 67.5
vmacro22929 Vaccinium macrocarpon HOM05D001874 ORTHO05D002166 3.9e-07 58.9 41 68.3
COL.COLO4_13412 Corchorus olitorius HOM05D001874 ORTHO05D002166 6.7e-07 58.2 40 67.5
MBI11_g13140_MAGBIO Magnolia biondii HOM05D001874 ORTHO05D002166 6.7e-07 58.2 40 70.0
MBI11_g40921_MAGBIO Magnolia biondii HOM05D001874 ORTHO05D002166 6.7e-07 58.2 40 70.0
Thecc.04G053000 Theobroma cacao HOM05D001874 ORTHO05D002166 6.7e-07 58.2 40 67.5
HPP92_023103 Vanilla planifolia HOM05D001874 ORTHO05D002166 6.7e-07 58.2 40 70.0
Atru.chr6.2741 Acer truncatum HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 70.0
Aa31LG1G1870 Aethionema arabicum HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
AL1G24550 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
AT1G12910 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
A09p63530 Brassica napus HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
C08p47030 Brassica napus HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
BolC8t52243H Brassica oleracea HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
BraA09t41704Z Brassica rapa HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
Carub.0001s1268 Capsella rubella HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
CARHR013240 Cardamine hirsuta HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
CARHR013270 Cardamine hirsuta HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
Thhalv10008091m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
PSO017G4193 Papaver somniferum HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
QL02p068113 Quercus lobata HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
SHI00495 Sapria himalayana HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
Sp1g11480 Schrenkiella parvula HOM05D001874 ORTHO05D002166 8.8e-07 57.8 40 67.5
Cc07_g01410 Coffea canephora HOM05D001874 ORTHO05D002166 1.1e-06 57.4 40 65.0
Potri.002G220500 Populus trichocarpa HOM05D001874 ORTHO05D002166 1.1e-06 57.4 39 69.2
Solyc04g082470.3 Solanum lycopersicum HOM05D001874 ORTHO05D002166 1.1e-06 57.4 40 70.0
Sopen04g036080 Solanum pennellii HOM05D001874 ORTHO05D002166 1.1e-06 57.4 40 70.0
TWI32G0051 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 1.1e-06 57.4 40 65.0
AT3G26640 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
Thhalv10005280m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
Gohir.A03G095400 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
Gohir.D02G113700 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
Gorai.005G129400 Gossypium raimondii HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
Sp2g15760 Schrenkiella parvula HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
TPR.G20661 Trifolium pratense HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
TWI34G1897 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 1.5e-06 57.0 40 65.0
Carub.0005s0465 Capsella rubella HOM05D001874 ORTHO05D002166 2.0e-06 56.6 39 66.7
Duzib212G0604 Durio zibethinus HOM05D001874 ORTHO05D002166 2.0e-06 56.6 40 65.0
Migut.H01347 Erythranthe guttata HOM05D001874 ORTHO05D002166 2.0e-06 56.6 41 63.4
MSTRG.7517 Avicennia marina HOM05D001874 ORTHO05D002166 2.5e-06 56.2 39 69.2
CANSAT64G2317 Cannabis sativa HOM05D001874 ORTHO05D002166 2.5e-06 56.2 40 65.0
MSTRG.16270 Avicennia marina HOM05D001874 ORTHO05D002166 3.3e-06 55.8 40 70.0
Ca_08240_v3 Cicer arietinum L. HOM05D001874 ORTHO05D002166 3.3e-06 55.8 40 62.5
Hma1.2p1_0868F.1_g230400 Hydrangea macrophylla HOM05D001874 ORTHO05D002166 3.3e-06 55.8 40 67.5
MD17G1003400 Malus domestica HOM05D001874 ORTHO05D002166 3.3e-06 55.8 40 67.5
ATR0582G331 Amborella trichopoda HOM05D001874 ORTHO05D002166 4.3e-06 55.5 40 65.0
AL5G15480 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 4.3e-06 55.5 40 62.5
EL10Ac6g13911 Beta vulgaris HOM05D001874 ORTHO05D002166 4.3e-06 55.5 40 65.0
BolC1t01040H Brassica oleracea HOM05D001874 ORTHO05D002166 4.3e-06 55.5 39 66.7
ECA238G4071 Erigeron canadensis HOM05D001874 ORTHO05D002166 5.7e-06 55.1 40 65.0
Actinidia19539 Actinidia chinensis HOM05D001874 ORTHO05D002166 9.7e-06 54.3 40 65.0


User provided reference genes

Program Settings