Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 8.0e-255 883.2 445 100.0
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 3.5e-210 734.9 445 84.7
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.4e-197 691.8 445 79.3
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 7.7e-197 690.6 445 80.0
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.2e-194 683.3 443 78.3
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.6e-189 665.6 447 76.5
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.4e-187 659.8 444 75.7
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.9e-187 659.4 445 75.3
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.2e-187 658.7 445 75.5
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.2e-187 658.3 447 75.8
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 7.2e-187 657.5 444 76.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.7e-186 655.6 482 71.2
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 3.6e-186 655.2 459 74.3
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.1e-185 651.4 445 73.7
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 5.1e-185 651.4 445 74.2
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 6.7e-185 651.0 445 74.4
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 6.7e-185 651.0 447 74.9
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.1e-184 650.2 445 74.2
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.5e-184 649.8 445 73.7
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-184 649.8 445 73.7
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 1.5e-184 649.8 445 74.2
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.6e-184 649.0 445 73.0
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.3e-184 648.7 445 74.4
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.4e-184 648.3 445 73.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 7.4e-184 647.5 445 73.3
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 7.4e-184 647.5 445 73.0
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.3e-183 646.7 446 74.2
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.7e-183 646.4 446 74.4
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 2.2e-183 646.0 445 72.8
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.2e-183 646.0 446 74.7
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.1e-182 643.7 443 72.5
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.5e-181 639.8 443 72.9
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.5e-181 639.8 445 73.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.5e-181 639.8 445 72.4
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.5e-181 639.8 445 72.4
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.0e-181 639.4 444 73.4
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.0e-181 639.4 445 73.3
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 3.5e-181 638.6 445 72.6
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 8.5e-180 634.0 445 73.7
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.4e-179 633.3 445 71.9
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.2e-179 632.1 445 72.4
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 4.2e-179 631.7 444 73.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 5.5e-179 631.3 445 72.1
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 9.4e-179 630.6 445 71.5
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 9.4e-179 630.6 443 71.3
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 2.1e-178 629.4 445 71.7
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 4.7e-178 628.2 446 71.7
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.0e-177 627.1 445 71.2
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.4e-177 626.7 443 71.8
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.4e-177 626.7 445 72.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 6.7e-177 624.4 447 72.0
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 6.7e-177 624.4 445 71.2
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.6e-176 622.5 446 71.1
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 5.7e-176 621.3 447 72.0
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 7.4e-176 620.9 509 66.6
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.7e-175 618.6 447 70.2
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 6.3e-175 617.8 443 70.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 8.2e-175 617.5 444 71.4
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.1e-174 617.1 445 71.7
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 4.1e-174 615.1 445 70.1
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 7.0e-174 614.4 446 70.4
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.2e-173 613.6 445 70.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.6e-173 612.5 446 71.1
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 3.5e-173 612.1 449 70.8
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 3.5e-173 612.1 450 69.8
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 5.9e-173 611.3 449 70.6
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.0e-172 610.5 447 70.5
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.0e-172 610.5 447 70.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.2e-172 609.4 447 70.2
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.5e-171 605.9 444 70.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 5.5e-171 604.7 443 68.6
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.7e-170 602.4 450 69.3
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 6.1e-170 601.3 450 69.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 8.0e-170 600.9 467 66.6
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.3e-169 599.4 449 68.4
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 4.0e-169 598.6 447 68.9
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 6.7e-169 597.8 443 68.6
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.5e-168 596.7 446 69.3
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.6e-168 595.9 444 68.2
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 4.4e-168 595.1 446 68.8
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.5e-168 594.3 445 67.6
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 7.5e-168 594.3 444 67.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 7.5e-168 594.3 408 73.5
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.5e-168 594.3 447 68.9
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 9.7e-168 594.0 444 67.6
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 9.7e-168 594.0 444 67.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.2e-167 592.8 445 68.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 6.3e-167 591.3 450 68.2
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 8.3e-167 590.9 444 68.2
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.1e-166 590.5 445 68.1
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.8e-166 589.7 447 68.5
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.1e-166 588.6 446 67.0
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 7.0e-166 587.8 443 67.5
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 7.0e-166 587.8 446 68.4
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 9.1e-166 587.4 444 67.3
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.6e-165 586.6 444 66.9
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.7e-165 585.9 446 67.0
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.5e-165 585.1 444 66.7
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.9e-165 584.7 446 68.2
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.9e-165 584.7 446 68.4
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 5.9e-165 584.7 446 68.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.3e-164 583.6 445 66.5
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-164 583.6 446 66.6
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-164 583.6 446 66.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.9e-164 582.4 445 67.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 3.8e-164 582.0 445 66.7
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.0e-164 581.6 444 66.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 5.0e-164 581.6 446 67.5
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.9e-163 579.7 443 67.0
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.2e-163 578.6 444 66.0
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 5.5e-163 578.2 452 68.6
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.5e-163 578.2 444 66.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 3.7e-159 565.5 435 68.3
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 3.1e-158 562.4 442 65.2
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.8e-156 555.4 450 63.8
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 9.8e-152 540.8 443 63.0
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 2.3e-148 529.6 382 71.5
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.7e-141 506.1 338 75.7
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 6.0e-141 505.0 443 58.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 9.5e-139 497.7 443 56.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.6e-138 496.9 333 74.5
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 8.9e-137 491.1 329 74.8
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.1e-133 479.9 335 73.1
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.0e-132 477.6 380 65.8
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.4e-129 467.2 443 55.1
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.6e-128 463.0 451 56.3
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 6.6e-124 448.4 453 55.8
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 8.1e-122 441.4 453 54.5
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 6.6e-108 395.2 234 81.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 2.1e-98 363.6 275 67.6
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.3e-82 311.2 464 41.8
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 2.2e-71 273.9 424 42.5
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.6e-69 266.5 213 65.3
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 3.9e-68 263.1 239 58.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 1.1e-59 235.0 361 41.0
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.3e-50 204.9 215 54.0
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 8.8e-44 182.2 288 44.4
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 2.8e-42 177.2 145 66.9
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.9e-38 164.5 219 44.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 8.9e-36 155.6 126 61.9
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.2e-29 135.2 79 83.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 3.1e-28 130.6 83 74.7
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.2e-27 128.6 86 69.8
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.4e-25 120.9 183 43.7
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 6.6e-23 112.8 109 56.9
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 8.1e-21 105.9 74 66.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 8.1e-21 105.9 74 66.2
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.1e-20 104.0 83 62.7
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.2e-20 103.2 74 64.9
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.2e-18 97.8 73 64.4
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 8.3e-18 95.9 139 43.9
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 8.3e-18 95.9 139 43.9
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.1e-17 95.5 73 63.0
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 5.4e-17 93.2 123 45.5
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.1e-14 85.5 66 59.1
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 3.6e-13 80.5 62 62.9
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 3.1e-12 77.4 65 53.8
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 4.9e-10 70.1 87 48.3
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 4.3e-06 57.0 145 31.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 5.6e-06 56.6 145 30.3


User provided reference genes

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