Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.3e-108 396.4 196 100.0
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 3.3e-67 258.8 144 88.9
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.8e-66 255.8 144 86.8
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.7e-66 255.0 144 86.8
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.8e-65 253.1 135 88.9
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.3e-65 252.7 144 84.7
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.0e-65 251.9 144 86.1
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 4.0e-65 251.9 135 88.1
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 6.8e-65 251.1 168 72.6
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.8e-65 251.1 144 86.1
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.9e-65 250.8 144 85.4
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 8.9e-65 250.8 133 89.5
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.2e-64 250.4 133 88.0
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 2.0e-64 249.6 141 86.5
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 2.0e-64 249.6 137 86.9
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.4e-64 248.4 144 84.7
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.8e-64 248.1 144 84.7
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.8e-64 248.1 144 84.7
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 7.5e-64 247.7 144 84.0
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 7.5e-64 247.7 144 84.0
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.5e-64 247.7 136 87.5
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 9.9e-64 247.3 133 88.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 9.9e-64 247.3 144 84.0
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-63 246.9 140 85.7
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-63 246.9 140 85.7
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.3e-63 246.9 144 84.0
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.7e-63 246.5 144 84.0
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.7e-63 246.5 144 84.0
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 2.2e-63 246.1 140 85.7
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.9e-63 245.7 144 84.0
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 2.9e-63 245.7 135 85.9
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 3.7e-63 245.4 141 84.4
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 3.7e-63 245.4 125 92.8
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.7e-63 245.4 141 84.4
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.9e-63 245.0 144 83.3
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.9e-63 245.0 144 83.3
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 4.9e-63 245.0 144 83.3
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.9e-63 245.0 144 82.6
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.9e-63 245.0 127 90.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 6.4e-63 244.6 140 85.0
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 6.4e-63 244.6 140 85.0
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 8.3e-63 244.2 141 83.7
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 8.3e-63 244.2 141 83.7
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 8.3e-63 244.2 141 83.0
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 8.3e-63 244.2 141 83.0
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.4e-62 243.4 144 82.6
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.4e-62 243.4 144 82.6
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-62 243.4 144 81.9
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.9e-62 243.0 143 82.5
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.9e-62 243.0 144 82.6
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 1.9e-62 243.0 144 81.9
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.4e-62 242.7 132 86.4
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.4e-62 242.7 149 81.9
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.4e-62 242.7 146 82.2
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 3.2e-62 242.3 144 82.6
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 3.2e-62 242.3 144 81.9
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.2e-62 242.3 144 81.2
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 4.1e-62 241.9 144 81.2
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 4.1e-62 241.9 144 81.2
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 4.1e-62 241.9 136 86.8
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 4.1e-62 241.9 136 86.8
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.1e-62 241.9 132 85.6
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 4.1e-62 241.9 140 83.6
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 5.4e-62 241.5 144 81.2
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 5.4e-62 241.5 143 81.8
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 5.4e-62 241.5 144 81.2
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 7.1e-62 241.1 144 80.6
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 9.2e-62 240.7 144 81.2
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 9.2e-62 240.7 144 82.6
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 9.2e-62 240.7 130 88.5
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 1.2e-61 240.4 144 80.6
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.2e-61 240.4 144 80.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-61 240.4 144 81.2
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.6e-61 240.0 138 82.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.6e-61 240.0 136 86.0
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.6e-61 240.0 140 82.1
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.1e-61 239.6 144 80.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.1e-61 239.6 130 86.9
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.7e-61 239.2 139 82.7
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.7e-61 239.2 149 78.5
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.7e-61 239.2 123 91.9
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 2.7e-61 239.2 130 86.9
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 3.5e-61 238.8 140 81.4
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.5e-61 238.8 140 83.6
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 4.6e-61 238.4 144 79.9
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.0e-61 238.0 144 81.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 6.0e-61 238.0 144 81.2
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 6.0e-61 238.0 144 80.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 6.0e-61 238.0 127 87.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 7.8e-61 237.7 144 81.2
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-60 237.3 130 87.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-60 237.3 130 87.7
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 78.5
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 78.5
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 78.5
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 78.5
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 78.5
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 79.2
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.0e-60 237.3 144 78.5
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.0e-60 237.3 140 82.9
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-60 236.9 144 81.9
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.3e-60 236.9 133 82.0
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.3e-60 236.9 144 79.9
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.3e-60 236.1 140 82.1
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.3e-60 236.1 144 77.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 2.3e-60 236.1 144 79.2
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 2.3e-60 236.1 129 86.0
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 3.0e-60 235.7 140 81.4
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.9e-60 235.3 130 86.2
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 3.9e-60 235.3 140 80.7
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.9e-60 235.3 140 81.4
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.9e-60 235.3 140 81.4
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 5.1e-60 235.0 145 80.0
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.1e-59 233.8 143 79.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.1e-59 233.8 143 79.7
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.1e-59 233.8 140 81.4
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.9e-59 233.0 126 87.3
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.5e-59 232.6 140 80.7
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.3e-59 231.9 126 87.3
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 4.3e-59 231.9 126 87.3
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.3e-59 231.9 126 87.3
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 4.3e-59 231.9 126 87.3
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.5e-59 230.7 132 84.1
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.6e-58 229.9 127 85.8
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.6e-58 229.9 138 80.4
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.6e-58 229.9 145 78.6
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.6e-58 229.9 127 84.3
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.1e-58 229.6 126 84.9
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.8e-58 229.2 126 86.5
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.8e-58 229.2 126 86.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.6e-58 228.8 126 84.9
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 8.1e-58 227.6 143 76.9
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.1e-57 227.3 130 83.1
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.8e-57 226.5 126 84.1
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 3.1e-57 225.7 140 77.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 3.1e-57 225.7 140 77.9
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.2e-57 224.9 128 82.8
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 4.4e-56 221.9 134 81.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.4e-56 221.9 137 76.6
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.4e-54 216.1 122 83.6
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 1.6e-53 213.4 144 72.2
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.7e-52 209.9 130 80.0
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 9.6e-51 204.1 110 87.3
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 8.1e-50 201.1 185 57.3
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.3e-49 198.4 144 71.5
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 7.6e-48 194.5 123 69.9
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.2e-47 193.0 116 76.7
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.2e-47 193.0 141 64.5
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.9e-47 192.6 123 69.1
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 2.5e-43 179.5 87 95.4
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.2e-39 166.4 136 64.0
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 4.2e-38 162.2 87 83.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 5.4e-38 161.8 80 91.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 9.3e-38 161.0 108 72.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.3e-34 150.6 95 78.9
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 3.7e-34 149.1 95 77.9
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.4e-33 147.1 95 76.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.8e-32 141.7 127 59.8
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.2e-30 135.6 74 81.1
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-28 131.0 71 90.1
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.7e-28 127.9 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.3e-27 125.6 71 87.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 9.6e-27 124.4 93 71.0
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.4e-25 120.6 77 77.9
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 3.2e-22 109.4 73 75.3
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.7e-19 98.6 55 81.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.0e-15 85.5 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 6.1e-13 78.6 75 56.0


User provided reference genes

Program Settings