Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.7e-164 582.8 337 100.0
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.7e-135 486.5 332 82.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 8.8e-129 464.2 337 71.8
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 4.4e-120 435.3 339 68.1
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 7.5e-120 434.5 339 73.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.7e-119 433.3 335 71.0
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.2e-119 433.0 325 73.5
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 6.3e-119 431.4 325 67.4
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 8.3e-119 431.0 331 66.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.5e-117 425.6 325 66.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 5.9e-117 424.9 324 66.7
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.3e-116 423.7 319 71.8
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.7e-116 423.3 323 68.1
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.9e-116 422.5 330 71.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 5.0e-116 421.8 326 68.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.3e-115 419.1 332 65.4
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 3.3e-115 419.1 324 65.1
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.2e-115 418.7 327 66.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.2e-115 418.7 327 66.7
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 9.5e-115 417.5 321 70.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.2e-114 417.2 334 68.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.6e-114 416.8 326 69.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.6e-114 416.8 323 70.6
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.1e-114 416.4 323 70.3
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.6e-114 415.6 330 67.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.7e-114 415.2 328 66.2
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.0e-113 414.1 328 68.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.0e-113 414.1 325 64.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.4e-113 413.7 337 64.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.4e-113 413.7 325 66.5
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 6.8e-113 411.4 326 66.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 6.8e-113 411.4 330 71.5
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.0e-112 409.8 322 64.3
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.0e-112 409.8 329 70.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.0e-112 409.8 328 67.7
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 2.6e-112 409.5 325 68.3
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.6e-112 409.5 323 65.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 4.4e-112 408.7 319 67.1
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-112 408.7 328 64.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 5.7e-112 408.3 325 67.4
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 7.5e-112 407.9 329 66.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.7e-111 406.8 332 69.0
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.2e-111 406.4 316 68.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.2e-111 406.4 316 72.5
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 3.7e-111 405.6 322 64.0
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.7e-111 405.6 335 67.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.9e-111 405.2 323 67.2
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 4.9e-111 405.2 315 69.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 6.4e-111 404.8 321 68.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 8.3e-111 404.4 314 69.1
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.1e-110 404.1 326 62.3
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.4e-110 403.7 325 66.8
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.4e-110 403.7 320 67.5
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.4e-110 403.7 328 67.7
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.4e-110 403.7 325 64.9
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.4e-110 403.7 325 68.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.8e-110 403.3 321 68.5
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.8e-110 403.3 351 61.3
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.8e-110 403.3 328 67.7
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.4e-110 402.9 323 67.2
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 3.2e-110 402.5 316 68.4
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.2e-110 402.5 324 63.3
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 4.1e-110 402.1 338 61.5
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.4e-110 401.7 329 66.3
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 7.0e-110 401.4 314 69.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 9.2e-110 401.0 324 63.0
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 9.2e-110 401.0 337 65.3
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-109 400.6 329 62.9
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.2e-109 400.6 354 60.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.6e-109 400.2 329 65.3
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.6e-109 398.7 325 67.4
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 4.6e-109 398.7 324 63.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.8e-109 397.9 320 67.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 7.8e-109 397.9 324 68.5
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.3e-108 397.1 314 67.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.5e-107 392.9 330 72.7
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 7.3e-107 391.3 318 63.2
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 9.5e-107 391.0 325 63.1
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 9.5e-107 391.0 324 61.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.2e-106 390.6 321 62.3
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-106 389.8 325 68.6
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.8e-106 389.4 319 65.2
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.0e-105 387.5 321 63.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.8e-105 386.7 316 62.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.8e-105 386.7 342 65.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 6.8e-105 384.8 328 61.6
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-104 384.0 248 74.6
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 3.4e-104 382.5 325 61.8
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 9.8e-104 380.9 329 60.5
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.9e-103 379.4 324 62.7
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 6.4e-103 378.3 312 61.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.4e-102 376.3 299 64.5
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.2e-102 375.9 279 68.5
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 4.6e-101 372.1 293 65.9
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.9e-100 369.0 310 71.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.6e-100 367.9 328 68.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-99 367.5 329 58.7
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.5e-99 367.1 337 68.0
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.6e-99 365.2 293 64.2
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.6e-98 363.6 320 59.1
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 8.1e-98 361.3 324 59.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 4.0e-97 359.0 294 62.9
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.4e-96 355.5 268 69.8
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.9e-95 352.8 272 64.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 6.4e-95 351.7 349 64.5
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 8.3e-95 351.3 300 64.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.4e-94 350.5 274 75.9
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.9e-94 350.1 289 62.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 7.1e-94 348.2 319 57.1
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-92 342.8 293 64.2
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.0e-92 342.8 205 88.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.5e-91 340.5 304 63.8
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.9e-91 340.1 224 76.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.3e-91 339.0 268 64.2
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.6e-91 338.6 293 62.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 4.7e-90 335.5 224 72.8
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 2.9e-87 326.2 339 59.9
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 3.9e-84 315.8 241 64.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 9.9e-80 301.2 334 50.3
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.7e-79 300.4 266 59.0
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.4e-79 298.5 286 56.6
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.9e-75 287.0 284 55.6
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 5.6e-75 285.4 217 67.7
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.1e-73 279.6 235 60.9
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.1e-69 266.9 222 63.5
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 6.6e-68 261.9 251 56.6
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 6.2e-66 255.4 294 50.0
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 8.4e-63 245.0 232 53.4
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.2e-62 243.0 205 59.5
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.5e-61 239.6 176 62.5
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.5e-59 234.2 224 55.4
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.9e-59 233.8 215 59.5
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.3e-59 233.0 166 70.5
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.3e-59 233.0 221 55.7
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.0e-57 226.1 198 62.6
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.4e-55 218.4 220 54.5
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 5.5e-54 215.7 277 52.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 7.1e-54 215.3 233 51.5
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.9e-52 209.5 128 76.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 9.6e-51 204.9 125 80.0
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 5.3e-49 199.1 264 54.9
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 9.0e-49 198.4 235 48.1
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 5.5e-46 189.1 202 57.9
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.8e-44 184.1 233 47.6
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 7.2e-38 162.2 157 49.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.2e-37 161.4 244 36.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 3.9e-36 156.4 165 51.5
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 8.8e-36 155.2 224 42.4
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.8e-34 150.2 121 68.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.0e-32 144.1 142 50.7
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 6.5e-31 139.0 188 46.3
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.6e-29 134.4 161 43.5
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.1e-29 132.5 114 55.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-28 131.3 159 46.5
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-28 131.3 159 46.5
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-28 131.3 159 46.5
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 4.2e-22 109.8 63 69.8
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.1e-21 107.5 275 43.6
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.6e-21 106.7 172 44.8
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 6.7e-20 102.4 63 66.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 8.8e-20 102.1 65 61.5
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.1e-19 101.7 62 69.4
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.5e-19 101.3 65 61.5
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-19 100.9 121 51.2
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 2.6e-19 100.5 62 66.1
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 2.6e-19 100.5 62 66.1
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.4e-19 99.8 62 69.4
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 4.8e-18 96.3 65 56.9
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 6.3e-18 95.9 65 60.0
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-17 95.1 86 61.6
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.8e-17 94.4 67 59.7
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.8e-17 94.4 67 59.7
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.4e-17 94.0 86 59.3
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 2.7e-16 90.5 87 52.9
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 3.5e-16 90.1 176 39.8
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-15 88.2 63 58.7
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-15 88.2 63 58.7
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 8.0e-13 79.0 66 48.5
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 8.0e-13 79.0 128 36.7
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.9e-08 62.8 84 40.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.5e-06 58.2 89 38.2
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 4.2e-06 56.6 71 46.5
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.2e-06 56.6 67 47.8
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 7.2e-06 55.8 44 63.6


User provided reference genes

Program Settings