Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 8.2e-123 443.7 225 100.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 9.4e-111 403.7 229 91.3
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 5.6e-95 351.3 225 78.2
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 3.4e-92 342.0 225 76.9
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 5.8e-92 341.3 225 75.6
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 7.1e-82 307.8 207 74.9
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 9.5e-79 297.4 250 62.0
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.7e-75 286.6 225 66.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 9.2e-74 280.8 230 65.7
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 8.6e-72 274.2 225 64.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.1e-71 273.9 216 65.7
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.5e-71 272.7 231 61.5
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 9.6e-71 270.8 222 63.5
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.2e-70 270.4 223 65.5
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.6e-70 270.0 225 62.7
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-70 269.6 225 61.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-70 269.6 225 61.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.1e-70 269.6 231 61.9
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.8e-70 269.2 225 60.9
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 2.8e-70 269.2 179 75.4
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.2e-69 265.0 228 60.1
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 5.2e-69 265.0 230 61.3
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 6.8e-69 264.6 228 61.4
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.0e-68 263.1 222 61.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 4.2e-66 255.4 226 58.8
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 7.1e-66 254.6 222 57.2
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 7.1e-66 254.6 225 59.1
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 7.1e-66 254.6 223 57.4
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.6e-65 253.4 226 60.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.6e-65 253.4 223 59.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.0e-64 250.8 225 59.6
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.3e-64 250.4 226 59.7
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.7e-64 250.0 225 60.0
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.9e-64 248.8 225 56.4
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 8.7e-64 247.7 229 56.8
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.5e-63 246.1 228 58.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 2.5e-63 246.1 229 56.8
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 3.3e-63 245.7 228 59.2
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.6e-63 244.2 216 58.8
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.6e-62 243.4 222 57.2
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.1e-62 243.0 227 56.4
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.8e-62 242.7 224 55.4
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 6.2e-62 241.5 227 59.0
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 8.1e-62 241.1 227 56.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 8.1e-62 241.1 227 57.7
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.1e-61 240.7 273 52.4
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.4e-61 240.4 227 55.5
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.4e-61 239.6 226 55.3
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 2.4e-61 239.6 225 55.1
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.1e-61 239.2 228 57.5
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 6.9e-61 238.0 226 56.2
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.2e-60 237.3 224 55.4
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-60 236.9 228 54.4
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.5e-60 236.9 228 54.4
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 3.4e-60 235.7 225 54.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 3.4e-60 235.7 221 52.9
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 4.4e-60 235.3 227 53.7
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 5.8e-60 235.0 227 55.9
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 9.9e-60 234.2 226 54.4
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 9.9e-60 234.2 224 54.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-59 233.8 227 55.5
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.7e-59 233.4 228 54.4
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 4.9e-59 231.9 226 53.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 6.4e-59 231.5 224 53.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.1e-58 230.7 229 53.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.1e-58 230.7 229 54.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.9e-58 229.9 229 52.4
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.9e-58 229.9 227 54.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 2.4e-58 229.6 229 53.3
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.4e-58 229.6 224 53.6
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.2e-58 229.2 225 58.2
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.2e-58 229.2 227 54.6
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 9.3e-58 227.6 229 52.4
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-57 227.3 226 52.2
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.2e-57 227.3 217 53.9
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.7e-57 226.1 225 55.1
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.5e-57 225.7 226 52.2
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.5e-57 225.7 229 51.1
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 4.6e-57 225.3 217 53.5
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 6.0e-57 224.9 221 52.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.9e-57 224.6 225 53.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.0e-56 224.2 225 53.3
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.3e-56 223.8 226 53.1
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 2.3e-56 223.0 227 51.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 2.3e-56 223.0 227 51.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.0e-56 222.6 229 53.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.9e-56 222.2 220 53.2
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.9e-56 222.2 227 52.0
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.6e-56 221.5 224 52.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.6e-56 221.5 220 53.2
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 8.7e-56 221.1 226 51.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 8.7e-56 221.1 226 51.8
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.1e-55 220.7 220 51.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-55 220.7 225 52.4
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.5e-55 220.3 229 50.7
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.5e-55 219.5 219 52.5
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 5.6e-55 218.4 290 45.5
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.3e-54 217.2 229 52.8
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.6e-54 216.9 221 49.8
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 6.2e-54 214.9 210 55.2
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.1e-53 214.2 174 66.1
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.4e-53 213.8 228 50.4
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.4e-53 213.0 220 51.8
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.1e-53 212.6 221 49.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 5.3e-53 211.8 227 48.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.2e-52 210.7 197 55.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.5e-52 210.3 246 47.2
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.3e-51 207.2 217 50.2
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 6.4e-51 204.9 220 50.0
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 8.4e-51 204.5 223 50.2
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 3.2e-50 202.6 196 57.7
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.7e-49 199.5 220 47.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 4.6e-49 198.7 200 52.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.5e-47 193.7 220 48.6
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.7e-46 189.1 216 48.1
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.1e-45 187.6 222 47.7
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.2e-44 184.1 225 48.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 7.6e-44 181.4 142 63.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.2e-43 179.9 146 61.6
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 3.2e-42 176.0 219 42.5
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 5.5e-42 175.3 222 42.3
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.1e-41 173.3 225 41.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.1e-41 173.3 225 41.3
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.7e-41 172.9 175 52.6
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 3.9e-40 169.1 221 42.5
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 3.3e-39 166.0 149 53.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 9.6e-39 164.5 179 53.6
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 6.3e-38 161.8 116 65.5
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.4e-36 156.0 220 45.9
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 5.9e-36 155.2 222 37.8
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.7e-35 153.7 171 49.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-35 153.3 161 51.6
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 8.4e-35 151.4 181 45.3
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 5.5e-34 148.7 202 44.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.0e-32 144.4 227 36.1
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.3e-32 144.1 115 61.7
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.9e-31 140.2 110 60.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.4e-29 133.3 118 52.5
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 2.6e-28 129.8 111 55.0
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.9e-28 128.6 225 37.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.4e-26 124.0 224 36.6
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 5.5e-26 122.1 93 69.9
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.5e-26 122.1 146 44.5
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.6e-25 120.6 222 32.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 6.3e-22 108.6 82 65.9
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.6e-20 103.2 140 45.7
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.5e-19 98.2 57 84.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.9e-18 97.1 127 46.5
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.2e-18 95.1 113 46.9
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 4.7e-17 92.4 220 30.0
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 6.1e-17 92.0 224 31.7
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 5.1e-16 89.0 140 40.0
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.1e-16 89.0 59 71.2
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.6e-12 77.4 223 25.6
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.7e-11 73.9 49 67.3
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 1.0e-08 64.7 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 3.7e-06 56.2 112 32.1


User provided reference genes

Program Settings