Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02543 Striga asiatica HOM05D000353 ORTHO05D000174 1.4e-75 286.2 139 100.0
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 2.7e-39 165.6 102 80.4
SGA_v2.0_scaffold21G09448 Striga asiatica HOM05D000353 ORTHO05D000174 4.0e-27 125.2 97 61.9
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 3.7e-25 118.6 107 54.2
SGA_v2.0_scaffold288G47243 Striga asiatica HOM05D000353 ORTHO05D000174 9.9e-18 94.0 62 66.1
SGA_v2.0_scaffold49G18365 Striga asiatica HOM05D024561 ORTHO05D002376 1.3e-17 93.6 53 83.0
SGA_v2.0_scaffold58G20511 Striga asiatica HOM05D002090 ORTHO05D001923 2.7e-15 85.9 65 67.7
SGA_v2.0_scaffold29G12295 Striga asiatica HOM05D002090 ORTHO05D001923 1.0e-14 84.0 79 51.9
SGA_v2.0_scaffold20G09082 Striga asiatica HOM05D001212 ORTHO05D000246 2.4e-11 72.8 37 94.6
SGA_v2.0_scaffold64G21996 Striga asiatica HOM05D001212 ORTHO05D000246 5.8e-10 68.2 37 86.5
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 2.2e-09 66.2 102 30.4
ECA238G2764 Erigeron canadensis HOM05D003964 ORTHO05D002376 6.4e-09 64.7 94 31.9
BolC5t33123H Brassica oleracea HOM05D000353 ORTHO05D015401 2.4e-08 62.8 102 28.4
ECA240G1473 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.2e-08 62.4 70 35.7
Cpa.g.sc187.27 Carica papaya HOM05D001212 ORTHO05D000246 5.4e-08 61.6 37 83.8
ECA246G2956 Erigeron canadensis HOM05D000353 ORTHO05D000174 5.4e-08 61.6 70 35.7
ECA240G2532 Erigeron canadensis HOM05D003964 ORTHO05D000174 9.3e-08 60.8 70 35.7
Sed0024191 Sechium edule HOM05D001212 ORTHO05D000246 9.3e-08 60.8 37 83.8
Glyma.14G112400 Glycine max HOM05D001212 ORTHO05D000246 1.2e-07 60.5 37 83.8
Peaxi162Scf00116g00083 Petunia axillaris HOM05D001212 ORTHO05D000246 1.2e-07 60.5 38 81.6
ECA236G2182 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.6e-07 60.1 68 36.8
ECA238G3300 Erigeron canadensis HOM05D003964 ORTHO05D000174 1.6e-07 60.1 70 35.7
Eucgr.C02727 Eucalyptus grandis HOM05D001212 ORTHO05D000246 2.1e-07 59.7 37 81.1
Lj1g0023269 Lotus japonicus HOM05D001212 ORTHO05D000246 3.5e-07 58.9 37 81.1
Medtr1g012960 Medicago truncatula HOM05D001212 ORTHO05D000246 3.5e-07 58.9 38 84.2
PSO017G0363 Papaver somniferum HOM05D001212 ORTHO05D000246 3.5e-07 58.9 37 81.1
PSO170G5952 Papaver somniferum HOM05D001212 ORTHO05D000246 3.5e-07 58.9 37 81.1
QL02p020199 Quercus lobata HOM05D001212 ORTHO05D000246 4.6e-07 58.5 37 81.1
arahy.Tifrunner.gnm1.ann1.2J1BD7 Arachis hypogaea HOM05D001212 ORTHO05D000246 6.0e-07 58.2 37 78.4
arahy.Tifrunner.gnm1.ann1.9SCD6T Arachis hypogaea HOM05D001212 ORTHO05D000246 6.0e-07 58.2 37 78.4
CiPaw.07G227100 Carya illinoinensis HOM05D001212 ORTHO05D000246 6.0e-07 58.2 37 81.1
Ca_13042_v3 Cicer arietinum L. HOM05D001212 ORTHO05D000246 6.0e-07 58.2 37 78.4
ECA232G3959 Erigeron canadensis HOM05D000096 ORTHO05D000045 6.0e-07 58.2 70 34.3
ECA238G2404 Erigeron canadensis HOM05D000353 ORTHO05D000174 6.0e-07 58.2 70 35.7
HanXRQChr13g0403111 Helianthus annuus HOM05D001212 ORTHO05D000246 6.0e-07 58.2 37 78.4
Lsat_1_v5_gn_6_20120 Lactuca sativa HOM05D001212 ORTHO05D000246 6.0e-07 58.2 38 76.3
GSVIVG01035921001 Vitis vinifera HOM05D001212 ORTHO05D000246 6.0e-07 58.2 37 78.4
arahy.Tifrunner.gnm1.ann1.1PI2YG Arachis hypogaea HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 78.4
arahy.Tifrunner.gnm1.ann1.TRGC7G Arachis hypogaea HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 78.4
CANSAT25G1761 Cannabis sativa HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 78.4
Cc08_g00210 Coffea canephora HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 81.1
Duzib150G0628 Durio zibethinus HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 78.4
ECA240G1459 Erigeron canadensis HOM05D000353 ORTHO05D000174 7.9e-07 57.8 70 34.3
Glyma.17G215500 Glycine max HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 81.1
TWI34G1381 Tripterygium wilfordii HOM05D001212 ORTHO05D000246 7.9e-07 57.8 37 78.4
C02p34900 Brassica napus HOM05D000353 ORTHO05D000174 1.0e-06 57.4 100 25.0
CSS0044960 Camellia sinensis var. sinensis HOM05D001212 ORTHO05D000246 1.0e-06 57.4 35 82.9
Nn8g39719 Nelumbo nucifera HOM05D001212 ORTHO05D000246 1.0e-06 57.4 37 78.4
PGR044G1766 Punica granatum HOM05D001212 ORTHO05D000246 1.0e-06 57.4 37 78.4
GSVIVG01012897001 Vitis vinifera HOM05D001212 ORTHO05D000246 1.0e-06 57.4 37 78.4
Ah.10g035690 Amaranthus hybridus HOM05D001212 ORTHO05D000246 1.3e-06 57.0 39 71.8
Duzib150G1394 Durio zibethinus HOM05D001212 ORTHO05D000246 1.3e-06 57.0 37 78.4
Duzib168G1729 Durio zibethinus HOM05D001212 ORTHO05D000246 1.3e-06 57.0 37 75.7
HanXRQChr16g0511121 Helianthus annuus HOM05D001212 ORTHO05D000246 1.3e-06 57.0 37 75.7
MD15G1130800 Malus domestica HOM05D001212 ORTHO05D000246 1.3e-06 57.0 37 78.4
Medtr3g106400 Medicago truncatula HOM05D001212 ORTHO05D000246 1.3e-06 57.0 36 77.8
Prupe.1G486200 Prunus persica HOM05D001212 ORTHO05D000246 1.3e-06 57.0 37 78.4
QL02p091335 Quercus lobata HOM05D001212 ORTHO05D000246 1.3e-06 57.0 37 78.4
TPR.G3150 Trifolium pratense HOM05D001212 ORTHO05D000246 1.3e-06 57.0 36 77.8
HPP92_000485 Vanilla planifolia HOM05D001212 ORTHO05D000246 1.3e-06 57.0 35 77.1
Atru.chr7.2500 Acer truncatum HOM05D001212 ORTHO05D000246 1.7e-06 56.6 37 75.7
HanXRQChr02g0050251 Helianthus annuus HOM05D001212 ORTHO05D000246 1.7e-06 56.6 37 75.7
Nitab4.5_0002992g0080 Nicotiana tabacum HOM05D001212 ORTHO05D000246 1.7e-06 56.6 37 78.4
Nitab4.5_0010572g0010 Nicotiana tabacum HOM05D001212 ORTHO05D000246 1.7e-06 56.6 37 78.4
Psat5g030920 Pisum sativum HOM05D001212 ORTHO05D000246 1.7e-06 56.6 36 77.8
Psat6g028400 Pisum sativum HOM05D001212 ORTHO05D000246 1.7e-06 56.6 38 78.9
Psat6g082280 Pisum sativum HOM05D002090 ORTHO05D001923 1.7e-06 56.6 69 34.8
TPR.G38896 Trifolium pratense HOM05D001212 ORTHO05D000246 1.7e-06 56.6 38 78.9
CSS0042236 Camellia sinensis var. sinensis HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
COL.COLO4_18914 Corchorus olitorius HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
Haze_21458 Corylus avellana HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
CsaV3_4G036880 Cucumis sativus L. HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
Dinv18153 Davidia involucrata HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
Glyma.06G065200 Glycine max HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
Gohir.A13G180600 Gossypium hirsutum HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
Gohir.D13G188500 Gossypium hirsutum HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
Gorai.013G213900 Gossypium raimondii HOM05D001212 ORTHO05D000246 2.3e-06 56.2 37 75.7
BolC6t35446H Brassica oleracea HOM05D000353 ORTHO05D000174 3.0e-06 55.8 100 24.0
ECA234G2462 Erigeron canadensis HOM05D000096 ORTHO05D000045 3.0e-06 55.8 70 34.3
Gorai.001G035700 Gossypium raimondii HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 75.7
Hma1.2p1_0182F.1_g080510 Hydrangea macrophylla HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 73.0
Manes.03G011800 Manihot esculenta HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 75.7
Phvul.009G090500 Phaseolus vulgaris HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 75.7
RcHm_v2.0_Chr6g0297211 Rosa chinensis HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 75.7
TWI32G0282 Tripterygium wilfordii HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 73.0
TAR383G0568 Trochodendron aralioides HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 75.7
HPP92_002966 Vanilla planifolia HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 73.0
VMungo1309G1499 Vigna mungo HOM05D001212 ORTHO05D000246 3.0e-06 55.8 37 75.7
AUR62012445 Chenopodium quinoa HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 75.7
AUR62031570 Chenopodium quinoa HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 75.7
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-06 55.5 75 33.3
ECA246G4192 Erigeron canadensis HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 73.0
Glyma.14G114467 Glycine max HOM05D001212 ORTHO05D000246 3.9e-06 55.5 38 73.7
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 3.9e-06 55.5 70 34.3
Lsat_1_v5_gn_6_115500 Lactuca sativa HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 75.7
Sed0019443 Sechium edule HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 73.0
Sed0025103 Sechium edule HOM05D001212 ORTHO05D000246 3.9e-06 55.5 35 80.0
Solyc08g041820.3 Solanum lycopersicum HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 75.7
PGSC0003DMG400015622 Solanum tuberosum HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 75.7
TAR636G0657 Trochodendron aralioides HOM05D001212 ORTHO05D000246 3.9e-06 55.5 37 75.7
EL10Ac2g04154 Beta vulgaris HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
COL.COLO4_24100 Corchorus olitorius HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
FAN27G1197 Fragaria x ananassa HOM05D001212 ORTHO05D000246 5.1e-06 55.1 40 70.0
Gohir.A05G011300 Gossypium hirsutum HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
Gohir.D05G012000 Gossypium hirsutum HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
Gohir.D07G034100 Gossypium hirsutum HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
Gorai.009G012300 Gossypium raimondii HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
MBI14_g46656_MAGBIO Magnolia biondii HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 73.0
Nn2g12249 Nelumbo nucifera HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
Oeu034999.1 Olea europaea HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 73.0
Rhsim02G0205900 Rhododendron simsii HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
Sabra18G0097000 Salix brachista HOM05D001212 ORTHO05D000246 5.1e-06 55.1 38 71.1
Hund04456 Selenicereus undatus HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 75.7
Sopen08g012000 Solanum pennellii HOM05D001212 ORTHO05D000246 5.1e-06 55.1 37 73.0
Ah.16g104810 Amaranthus hybridus HOM05D001212 ORTHO05D000246 6.6e-06 54.7 37 75.7
Ciclev10008821m.g Citrus clementina HOM05D001212 ORTHO05D000246 6.6e-06 54.7 37 73.0
ECA246G3040 Erigeron canadensis HOM05D000353 ORTHO05D000174 6.6e-06 54.7 67 35.8
Glyma.04G064100 Glycine max HOM05D001212 ORTHO05D000246 6.6e-06 54.7 37 73.0
Gohir.A06G099900 Gossypium hirsutum HOM05D001212 ORTHO05D000246 6.6e-06 54.7 37 73.0
HanXRQChr15g0471441 Helianthus annuus HOM05D003964 ORTHO05D000174 6.6e-06 54.7 66 34.8
Thecc.09G019600 Theobroma cacao HOM05D001212 ORTHO05D000246 6.6e-06 54.7 37 73.0
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 6.6e-06 54.7 103 26.2
Ciclev10008269m.g Citrus clementina HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
MELO3C016988.2 Cucumis melo HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
DCAR_022904 Daucus carota HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
Dinv41423 Davidia involucrata HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
Dinv42913 Davidia involucrata HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
Dinv43187 Davidia involucrata HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
FvH4_2g28300 Fragaria vesca HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
FAN20G1474 Fragaria x ananassa HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
FAN24G3512 Fragaria x ananassa HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
HanXRQChr17g0556341 Helianthus annuus HOM05D007823 ORTHO05D000174 8.7e-06 54.3 103 29.1
Lj6g0027679 Lotus japonicus HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 67.6
MBI15_g03062_MAGBIO Magnolia biondii HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0
Potri.006G190000 Populus trichocarpa HOM05D001212 ORTHO05D000246 8.7e-06 54.3 37 73.0


User provided reference genes

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