Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20592 Striga asiatica HOM05D000003 ORTHO05D017149 1.2e-57 226.1 104 100.0
SGA_v2.0_scaffold22G09699 Striga asiatica HOM05D000003 ORTHO05D000004 1.4e-13 79.7 86 45.3
SGA_v2.0_scaffold104G30166 Striga asiatica HOM05D000003 ORTHO05D000004 1.8e-11 72.8 94 43.6
SGA_v2.0_scaffold122G33296 Striga asiatica HOM05D000003 ORTHO05D000004 2.0e-10 69.3 73 50.7
SGA_v2.0_scaffold244G44341 Striga asiatica HOM05D000003 ORTHO05D000004 4.3e-10 68.2 88 42.0
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 2.2e-09 65.9 81 38.3
Medtr4g065063 Medicago truncatula HOM05D000003 ORTHO05D000004 2.2e-09 65.9 85 41.2
Atru.chr4.1426 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-09 64.7 53 49.1
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-09 64.3 53 47.2
ClCG10G012420 Citrullus lanatus HOM05D000003 ORTHO05D000004 6.3e-09 64.3 62 45.2
Atru.chr4.252 Acer truncatum HOM05D000003 ORTHO05D000004 8.2e-09 63.9 85 37.6
Atru.chr11.265 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 63.5 58 44.8
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 1.1e-08 63.5 81 35.8
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 1.1e-08 63.5 99 30.3
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.1e-08 63.5 101 33.7
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-08 63.2 81 37.0
Prupe.4G011200 Prunus persica HOM05D000003 ORTHO05D000004 1.4e-08 63.2 84 36.9
Prupe.6G123900 Prunus persica HOM05D000003 ORTHO05D000004 1.4e-08 63.2 84 36.9
Prupe.1G205500 Prunus persica HOM05D000003 ORTHO05D000167 1.8e-08 62.8 57 43.9
Atru.chr5.2535 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-08 62.4 57 45.6
Atru.chr9.1114 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.0 56 44.6
SGA_v2.0_scaffold61G21264 Striga asiatica HOM05D017438 ORTHO05D000004 3.1e-08 62.0 86 37.2
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-08 61.6 56 42.9
Atru.chr2.2049 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-08 61.6 63 44.4
Atru.chr9.813 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-08 61.6 84 38.1
SGA_v2.0_scaffold299G47717 Striga asiatica HOM05D000003 ORTHO05D000004 5.3e-08 61.2 86 36.0
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 5.3e-08 61.2 81 38.3
Atru.chr1.1374 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-08 60.5 92 37.0
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-08 60.5 51 49.0
Atru.chr5.1598 Acer truncatum HOM05D000856 ORTHO05D000167 9.1e-08 60.5 110 30.9
Atru.chr6.788 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-08 60.5 56 44.6
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 9.1e-08 60.5 87 33.3
SGA_v2.0_scaffold250G45022 Striga asiatica HOM05D000003 ORTHO05D000004 9.1e-08 60.5 88 36.4
SGA_v2.0_scaffold279G46783 Striga asiatica HOM05D005209 ORTHO05D006188 9.1e-08 60.5 81 30.9
Manes.10G125312 Manihot esculenta HOM05D000003 ORTHO05D000167 1.2e-07 60.1 70 40.0
SGA_v2.0_scaffold62G21450 Striga asiatica HOM05D016777 ORTHO05D012297 1.2e-07 60.1 81 35.8
Atru.chr10.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 59.7 70 42.9
Atru.chr2.314 Acer truncatum HOM05D000003 ORTHO05D000126 1.5e-07 59.7 52 44.2
SGA_v2.0_scaffold95G28813 Striga asiatica HOM05D000003 ORTHO05D000004 1.5e-07 59.7 77 40.3
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.5e-07 59.7 85 36.5
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.3 56 41.1
Atru.chr10.1454 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 59.3 56 39.3
Atru.chr13.1582 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.3 70 42.9
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 59.3 74 36.5
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.3 85 35.3
Atru.chr9.674 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.3 54 40.7
Os01g0967700 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000004 2.0e-07 59.3 86 36.0
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-07 58.9 87 32.2
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-07 58.9 87 32.2
CANSAT35G1919 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-07 58.9 56 41.1
BcaB04g17562 Brassica carinata HOM05D000003 ORTHO05D001498 3.4e-07 58.5 82 39.0
CANSAT80G2272 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-07 58.5 56 42.9
COL.COLO4_25871 Corchorus olitorius HOM05D000003 ORTHO05D017149 3.4e-07 58.5 88 39.8
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 3.4e-07 58.5 67 40.3
CANSAT11G0084 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-07 58.2 56 42.9
CANSAT56G2889 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-07 58.2 56 39.3
SGA_v2.0_scaffold28G11732 Striga asiatica HOM05D056663 ORTHO05D011213 4.5e-07 58.2 67 38.8
Atru.chr10.149 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-07 57.8 58 44.8
Atru.chr4.2367 Acer truncatum HOM05D000003 ORTHO05D000167 5.9e-07 57.8 55 45.5
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-07 57.8 88 34.1
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 5.9e-07 57.8 53 49.1
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-07 57.8 98 32.7
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-07 57.8 69 40.6
RhsimUnG0169300 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.9e-07 57.8 70 34.3
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 5.9e-07 57.8 53 47.2
Atru.chr6.2238 Acer truncatum HOM05D000003 ORTHO05D000167 7.7e-07 57.4 83 34.9
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-07 57.4 66 42.4
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 7.7e-07 57.4 48 41.7
FvH4_6g18902 Fragaria vesca HOM05D000003 ORTHO05D010713 7.7e-07 57.4 50 50.0
Atru.chr3.587 Acer truncatum HOM05D000003 ORTHO05D017149 1.0e-06 57.0 75 36.0
Atru.chr6.485 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 57.0 56 39.3
Atru.chr6.783 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 57.0 53 45.3
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-06 57.0 79 35.4
CANSAT54G1357 Cannabis sativa HOM05D000003 ORTHO05D009135 1.0e-06 57.0 64 40.6
Sed0004028 Sechium edule HOM05D000003 ORTHO05D000004 1.0e-06 57.0 56 42.9
SGA_v2.0_scaffold275G46581 Striga asiatica HOM05D000003 ORTHO05D000004 1.0e-06 57.0 51 49.0
Atru.chr10.1987 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 56.6 58 39.7
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 56.6 86 32.6
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 56.6 55 41.8
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 56.6 56 41.1
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 56.6 52 46.2
Atru.chr11.1423 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 56.2 55 45.5
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 56.2 53 37.7
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 56.2 53 49.1
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 56.2 51 45.1
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-06 56.2 87 34.5
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-06 55.8 52 44.2
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-06 55.8 67 35.8
Atru.chr8.899 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-06 55.8 53 41.5
Manes.10G106150 Manihot esculenta HOM05D000003 ORTHO05D000004 2.2e-06 55.8 54 44.4
Sed0000842 Sechium edule HOM05D000003 ORTHO05D000126 2.2e-06 55.8 54 46.3
Sed0016145 Sechium edule HOM05D000003 ORTHO05D000004 2.2e-06 55.8 84 36.9
CANSAT80G0722 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-06 55.5 85 35.3
FvH4_3g29411 Fragaria vesca HOM05D000003 ORTHO05D000006 2.9e-06 55.5 52 42.3
Manes.15G185801 Manihot esculenta HOM05D000003 ORTHO05D000167 2.9e-06 55.5 51 45.1
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-06 55.5 85 29.4
QL04p096362 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-06 55.5 62 38.7
SGA_v2.0_scaffold57G20144 Striga asiatica HOM05D000003 ORTHO05D017149 2.9e-06 55.5 56 48.2
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-06 55.1 53 43.4
Atru.chr8.605 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-06 55.1 54 44.4
CANSAT54G2053 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-06 55.1 69 36.2
Medtr8g008830 Medicago truncatula HOM05D015550 ORTHO05D014649 3.8e-06 55.1 65 35.4
Atru.chr6.942 Acer truncatum HOM05D000269 ORTHO05D000216 5.0e-06 54.7 50 46.0
CSS0014223 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 5.0e-06 54.7 83 32.5
CSS0046159 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 5.0e-06 54.7 83 32.5
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.0e-06 54.7 61 34.4
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.0e-06 54.7 61 34.4
FvH4_4g22682 Fragaria vesca HOM05D000003 ORTHO05D011656 5.0e-06 54.7 61 39.3
Manes.05G188350 Manihot esculenta HOM05D000003 ORTHO05D000004 5.0e-06 54.7 54 44.4
QL05p084194 Quercus lobata HOM05D000309 ORTHO05D000271 5.0e-06 54.7 71 36.6
Sed0009869 Sechium edule HOM05D000003 ORTHO05D000167 5.0e-06 54.7 54 42.6
Atru.chr11.1421 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-06 54.3 54 44.4
Atru.chr12.2225 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-06 54.3 72 36.1
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-06 54.3 56 42.9
EL10Ac6g14227 Beta vulgaris HOM05D000003 ORTHO05D000004 6.5e-06 54.3 86 34.9
AUR62015281 Chenopodium quinoa HOM05D000003 ORTHO05D000004 6.5e-06 54.3 51 41.2
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 8.5e-06 53.9 56 37.5
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 8.5e-06 53.9 56 41.1
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 8.5e-06 53.9 54 35.2
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 8.5e-06 53.9 51 43.1


User provided reference genes

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