Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 3735.7 1921 100.0
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2500.7 1986 67.2
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2485.7 1997 66.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2095.9 1981 57.0
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1996.1 1999 54.5
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1963.3 2050 52.5
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1913.3 1994 52.9
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1912.5 1979 53.0
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1900.6 1988 53.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1886.3 1980 51.8
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1884.8 2062 50.4
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1878.6 2001 51.4
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1850.5 1965 51.3
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1850.5 2016 50.8
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1848.9 1985 51.4
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1844.7 1983 51.2
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1840.5 1976 50.5
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1839.3 1971 50.0
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1829.3 1967 50.6
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1813.9 1979 49.9
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1813.5 1982 51.0
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1809.7 1938 50.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1807.7 1970 50.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1803.9 1998 49.9
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1803.5 2178 47.3
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1793.1 1982 50.4
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1771.9 1982 49.6
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1770.4 1982 49.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1765.4 1829 52.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1762.3 1979 49.5
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1753.8 2066 47.7
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1750.3 1976 48.9
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1736.5 1980 48.4
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1719.5 1985 49.2
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1716.8 1979 48.3
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1711.4 1995 49.1
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1704.9 1992 48.9
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1700.6 1977 48.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1698.3 1977 48.1
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1696.8 2193 45.1
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1695.6 1961 48.3
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1693.3 1978 47.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1689.9 1974 47.4
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1685.2 1987 47.7
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1679.5 1988 47.4
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1668.3 1784 50.8
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1661.4 1976 47.4
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1656.7 2062 45.5
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1639.8 1964 47.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1630.5 2016 46.2
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1628.2 1975 46.4
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1621.3 2070 44.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1605.1 1975 45.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1600.9 1982 46.7
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1593.6 1977 45.8
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1573.5 1997 44.7
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1570.8 2026 45.1
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1563.5 1974 44.4
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1563.1 1980 44.8
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1558.5 1971 44.5
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1557.3 2117 43.7
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1555.0 1980 44.0
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1555.0 1965 45.5
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1551.2 1981 44.6
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1550.8 2030 44.1
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1550.0 1984 44.5
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1544.6 1976 44.2
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1544.3 1968 44.6
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1543.9 1979 44.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1542.7 1982 44.2
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1508.0 1937 46.3
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1473.8 2332 41.6
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1442.6 1737 46.7
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1432.2 2022 41.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1399.8 1974 42.0
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1380.2 1996 43.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1363.2 1999 41.9
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1334.7 2013 40.4
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1165.2 1386 48.1
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1149.8 1260 50.9
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1148.3 1387 47.2
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1102.4 1499 44.0
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 2.3e-306 1056.6 1345 46.7
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.5e-289 1000.7 1220 47.7
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 5.5e-268 929.1 1095 48.2
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.3e-263 912.5 1245 43.6
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.2e-252 876.7 2068 29.9
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 8.9e-242 842.0 779 56.0
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 2.5e-236 823.9 2099 28.8
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.8e-226 791.2 2094 29.0
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 6.0e-214 749.6 710 56.9
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.6e-211 740.3 602 61.8
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.2e-208 731.1 1023 42.3
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 4.0e-202 710.3 655 56.0
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.8e-181 641.7 718 48.7
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.5e-176 622.9 1427 30.5
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 7.4e-172 609.8 1341 34.3
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 7.2e-167 593.2 836 39.7
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.7e-166 591.3 751 45.0
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 3.4e-161 574.3 476 59.9
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.2e-160 571.6 673 45.2
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.2e-142 512.7 742 40.2
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 2.9e-123 448.4 336 65.2
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 3.9e-112 411.4 494 45.7
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.5e-111 409.5 932 34.5
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.3e-109 402.1 532 44.9
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.2e-107 395.6 1764 23.8
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 7.6e-100 370.5 774 33.6
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-90 339.7 604 36.4
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 7.8e-89 334.0 421 47.0
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 8.4e-83 313.9 655 35.1
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.3e-80 305.8 394 45.7
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.3e-79 301.6 209 70.3
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.4e-79 300.8 750 32.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.9e-74 286.2 631 31.9
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.1e-70 272.7 215 61.4
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 1.1e-55 223.8 181 64.6
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 3.5e-44 185.7 207 46.4
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.0e-43 184.1 478 29.3
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 6.5e-35 154.8 361 31.0
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.9e-34 153.3 100 74.0
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 9.1e-29 134.4 551 24.5
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.2e-28 134.0 124 54.0
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.5e-28 132.5 161 44.1
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 6.5e-27 128.3 92 64.1
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.2e-26 125.6 342 30.7
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 6.8e-24 118.2 160 41.2
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 8.3e-22 111.3 127 44.9
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 2.4e-21 109.8 97 53.6
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 2.7e-20 106.3 100 51.0
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.9e-19 102.8 147 37.4
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 2.9e-19 102.8 101 51.5
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.5e-18 100.5 91 49.5
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.2e-17 97.4 157 40.1
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.6e-17 97.1 127 44.1
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.4e-16 94.0 67 70.1
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.0e-16 92.4 105 43.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 9.8e-15 87.8 90 48.9
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 3.7e-14 85.9 62 58.1
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.4e-13 84.0 59 61.0
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 1.8e-13 83.6 68 58.8
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.8e-13 83.6 176 33.5
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.9e-11 76.3 278 25.5
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 8.6e-11 74.7 108 42.6
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.5e-10 73.9 194 28.4
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.9e-10 73.6 111 39.6
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 1.6e-09 70.5 99 47.5
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 3.6e-09 69.3 106 35.8
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 8.9e-08 64.7 87 39.1
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.2e-07 64.3 68 50.0
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 3.4e-07 62.8 105 28.6
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 5.8e-07 62.0 80 40.0
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 5.8e-07 62.0 56 51.8
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.3e-06 60.8 127 32.3
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 1.7e-06 60.5 91 29.7


User provided reference genes

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