Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 4.4e-233 810.8 383 100.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 2.3e-186 655.6 357 83.8
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 4.4e-185 651.4 356 82.0
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 6.0e-182 641.0 356 82.9
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 3.4e-177 625.2 356 80.1
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 4.4e-177 624.8 357 80.1
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 5.8e-177 624.4 357 79.8
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 9.9e-177 623.6 368 79.3
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.3e-176 623.2 357 79.3
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 3.8e-176 621.7 357 78.4
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 8.4e-176 620.5 357 78.7
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.4e-175 617.8 356 79.2
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 2.7e-174 615.5 357 76.2
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.6e-174 614.8 357 77.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 7.8e-174 614.0 357 77.9
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.0e-173 613.6 360 77.8
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.3e-173 613.2 357 77.0
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.3e-173 613.2 357 77.6
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.7e-173 612.8 365 76.7
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 5.1e-173 611.3 357 77.6
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 6.6e-173 610.9 358 78.2
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 6.6e-173 610.9 357 78.2
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.5e-172 609.8 357 77.9
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.5e-172 609.0 382 73.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.5e-172 609.0 375 74.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 3.3e-172 608.6 357 77.9
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.3e-172 608.2 357 77.0
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 5.6e-172 607.8 357 76.8
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 7.3e-172 607.4 356 78.1
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 9.6e-172 607.1 357 77.0
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 9.6e-172 607.1 357 77.3
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.6e-171 606.3 382 72.8
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 2.8e-171 605.5 357 77.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.8e-171 605.5 357 77.6
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 8.1e-171 604.0 357 77.3
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 8.1e-171 604.0 358 76.8
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.8e-170 602.8 357 77.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.8e-170 602.8 351 76.4
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.1e-170 602.1 366 75.4
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 3.1e-170 602.1 357 77.0
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.6e-169 599.0 357 75.4
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 5.8e-169 597.8 357 73.9
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 7.6e-169 597.4 373 75.3
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 9.9e-169 597.0 357 76.8
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-168 596.7 357 76.8
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 2.9e-168 595.5 358 75.7
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 6.4e-168 594.3 357 74.8
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.1e-167 593.6 357 74.5
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.4e-167 593.2 357 74.8
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 2.4e-167 592.4 356 75.8
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 3.2e-167 592.0 358 74.3
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 4.2e-167 591.7 357 73.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 4.2e-167 591.7 358 74.9
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 5.4e-167 591.3 357 73.9
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 5.4e-167 591.3 357 73.9
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-166 589.7 357 74.5
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.6e-166 589.7 354 75.7
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 2.1e-166 589.3 357 72.8
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 2.7e-166 589.0 353 75.4
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 4.6e-166 588.2 358 74.6
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 6.6e-165 584.3 357 73.1
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.1e-164 583.6 357 74.2
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.5e-164 583.2 356 73.3
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 2.5e-164 582.4 355 74.4
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.3e-164 581.6 357 73.7
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 4.3e-164 581.6 351 74.9
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 5.6e-164 581.3 357 73.1
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 9.6e-164 580.5 355 73.5
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.3e-163 580.1 357 73.1
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-163 579.7 366 73.0
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.8e-163 578.9 357 72.0
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 6.2e-163 577.8 357 72.5
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 6.2e-163 577.8 356 73.6
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 5.3e-162 574.7 357 71.4
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.5e-161 573.2 357 72.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 3.4e-161 572.0 352 73.6
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.7e-160 569.7 358 71.5
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.8e-160 568.5 328 77.1
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-158 563.1 356 69.9
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.1e-158 562.8 357 72.3
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.1e-158 562.8 357 71.1
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.9e-157 558.5 355 70.1
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.1e-157 558.1 363 71.6
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.5e-156 556.6 351 70.1
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.9e-156 556.2 375 66.1
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.9e-156 556.2 352 70.2
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.6e-156 554.7 356 69.7
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 7.4e-156 554.3 380 66.3
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.3e-155 553.5 356 69.9
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.8e-155 552.4 357 69.2
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 3.7e-155 552.0 375 66.1
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.8e-155 551.6 350 73.7
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 6.2e-155 551.2 356 69.4
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.1e-154 550.4 352 69.0
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.4e-154 549.3 352 69.3
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 2.4e-154 549.3 443 59.8
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 5.3e-154 548.1 352 69.0
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.5e-153 546.6 357 70.9
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 7.6e-153 544.3 353 68.8
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.2e-152 542.7 386 63.7
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.9e-152 542.3 356 67.4
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 3.8e-152 542.0 405 64.4
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 7.1e-151 537.7 356 68.5
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.2e-150 537.0 361 69.8
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.0e-149 533.9 388 65.5
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.6e-147 526.6 308 78.2
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.4e-146 523.5 356 66.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 3.1e-146 522.3 380 62.9
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.5e-145 520.0 380 63.4
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.5e-145 520.0 358 64.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 3.2e-143 512.3 358 63.4
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.3e-141 506.9 355 63.4
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.5e-140 503.4 358 63.4
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.1e-138 497.3 375 61.9
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.1e-138 497.3 352 64.2
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 3.1e-138 495.7 357 61.1
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.6e-137 492.7 293 74.1
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.1e-130 469.2 349 62.5
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.1e-122 444.1 360 59.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 8.5e-120 434.5 357 59.4
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 7.7e-113 411.4 413 51.6
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 2.8e-107 392.9 260 67.7
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-98 364.4 250 68.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.9e-95 353.6 206 78.2
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 6.1e-94 348.6 328 53.7
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.3e-93 346.7 220 72.7
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.1e-86 323.6 199 73.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.9e-82 310.5 196 75.0
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.7e-81 306.6 358 45.8
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.0e-80 302.4 357 45.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.5e-79 300.1 360 44.7
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.6e-79 298.9 164 80.5
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 2.3e-77 293.5 375 43.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 7.1e-74 282.0 170 72.4
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.5e-63 247.7 171 69.0
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.2e-44 184.9 94 85.1
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.0e-44 184.1 406 31.3
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 3.8e-35 153.3 105 66.7
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 6.5e-35 152.5 110 63.6
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 8.7e-32 142.1 129 60.5
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 1.2e-25 121.7 67 80.6
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 7.9e-25 119.0 92 62.0
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 5.5e-18 96.3 163 37.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.2e-17 95.1 47 91.5
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 7.9e-17 92.4 63 66.7
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.0e-15 87.8 43 88.4
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 7.4e-15 85.9 157 36.3
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 3.1e-13 80.5 46 78.3
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.4e-10 71.6 40 80.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 1.7e-06 58.2 30 66.7
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 2.2e-06 57.8 29 69.0
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 4.8e-06 56.6 32 75.0
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 4.8e-06 56.6 32 75.0
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 8.2e-06 55.8 66 43.9


User provided reference genes

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