Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 0.0e+00 1196.4 596 100.0
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 1.3e-271 939.5 647 74.2
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 7.0e-262 907.1 652 71.5
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 2.2e-252 875.5 656 69.2
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 3.1e-246 855.1 632 68.7
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 7.0e-246 854.0 605 71.2
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 7.7e-245 850.5 633 68.4
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 5.2e-241 837.8 638 66.8
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 5.7e-240 834.3 633 66.7
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 9.8e-240 833.6 631 68.1
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 9.8e-240 833.6 631 68.1
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 2.7e-237 825.5 637 65.1
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 4.5e-237 824.7 657 65.1
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 5.0e-236 821.2 637 64.8
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 3.3e-235 818.5 655 65.0
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 1.6e-234 816.2 658 64.1
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.3e-233 812.4 632 65.5
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 4.0e-233 811.6 637 64.7
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 6.8e-233 810.8 634 65.1
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 8.3e-231 803.9 655 63.5
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 8.3e-231 803.9 630 64.6
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 8.3e-231 803.9 643 64.2
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 1.1e-230 803.5 652 62.0
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 7.0e-230 800.8 636 64.0
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 2.7e-229 798.9 648 63.3
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 3.5e-229 798.5 621 65.4
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 6.0e-229 797.7 643 63.5
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 7.8e-229 797.3 637 63.9
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.0e-228 797.0 631 64.3
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 1.0e-228 797.0 639 64.5
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 3.9e-228 795.0 659 63.0
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 3.9e-228 795.0 622 65.1
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 6.6e-228 794.3 652 62.4
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 6.6e-228 794.3 614 65.6
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 6.6e-228 794.3 608 67.6
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.1e-227 793.5 630 64.6
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 1.9e-227 792.7 629 63.9
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 2.5e-227 792.3 621 64.9
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 4.3e-227 791.6 626 65.0
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 7.3e-227 790.8 621 64.7
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.2e-226 790.0 606 65.8
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.8e-225 786.2 650 62.8
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 1.8e-225 786.2 637 63.9
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 3.1e-225 785.4 659 62.2
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 5.2e-225 784.6 621 63.9
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 3.4e-224 781.9 527 71.9
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 5.8e-224 781.2 523 72.5
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 1.3e-223 780.0 651 61.3
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.1e-222 776.9 638 63.2
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.4e-222 776.5 651 61.1
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 5.4e-222 774.6 642 62.3
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 1.2e-221 773.5 650 60.9
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.7e-221 772.3 655 61.2
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 6.0e-221 771.2 630 63.0
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 2.3e-220 769.2 654 60.7
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 5.1e-220 768.1 625 63.2
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 6.2e-218 761.1 623 62.3
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 5.2e-217 758.1 523 70.9
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 8.9e-217 757.3 652 60.1
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 9.9e-216 753.8 643 61.3
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.9e-215 752.3 682 58.5
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 4.9e-215 751.5 645 60.9
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.6e-213 746.5 651 59.3
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 2.3e-212 742.7 629 60.4
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 6.6e-212 741.1 588 64.1
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 9.5e-211 737.3 631 61.5
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 2.8e-210 735.7 653 58.8
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.6e-210 735.3 593 63.4
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 2.4e-209 732.6 607 61.3
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 2.6e-208 729.2 629 60.1
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 9.9e-208 727.2 629 59.9
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 1.1e-206 723.8 619 59.8
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 1.1e-206 723.8 622 60.1
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 4.2e-206 721.8 627 59.2
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 5.4e-206 721.5 631 60.5
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 6.0e-205 718.0 631 58.6
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.0e-204 717.2 629 59.3
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 5.1e-204 714.9 622 59.5
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.1e-203 713.8 629 58.7
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.9e-203 713.0 629 58.3
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 7.3e-203 711.1 644 58.5
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 2.8e-202 709.1 628 59.6
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 8.1e-202 707.6 633 58.0
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.4e-201 706.8 588 62.2
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 4.0e-201 705.3 631 57.5
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 4.4e-200 701.8 631 57.5
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 4.4e-200 701.8 631 57.5
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 2.7e-197 692.6 655 55.4
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 5.1e-196 688.3 632 57.0
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 3.3e-195 685.6 808 48.5
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.1e-193 679.1 601 59.9
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 5.8e-192 674.9 577 60.7
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.9e-191 672.5 589 61.1
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 7.9e-189 664.5 659 52.7
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.7e-183 646.7 553 60.6
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 5.3e-177 625.2 637 52.3
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.6e-173 613.6 568 54.6
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 6.0e-173 611.7 629 52.3
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.4e-171 604.7 500 62.4
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 6.9e-169 598.2 638 47.6
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.8e-164 583.6 626 50.6
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.7e-164 581.6 626 50.6
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.3e-163 578.9 626 50.5
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-161 573.9 626 50.0
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.1e-158 564.3 588 48.8
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.4e-156 557.4 613 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 3.5e-152 542.7 486 55.1
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.6e-136 490.7 365 66.6
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.5e-115 421.0 321 69.2
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.1e-100 371.7 396 52.0
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 2.5e-94 350.5 305 58.0
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 8.4e-90 335.5 182 86.8
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.8e-76 291.2 186 74.2
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 4.0e-76 290.0 688 29.2
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 2.0e-75 287.7 645 32.1
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.8e-68 264.6 258 55.0
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 3.1e-60 237.3 528 30.3
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.3e-54 217.2 148 69.6
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.7e-50 204.9 132 75.0
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.1e-48 198.0 135 68.9
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.4e-47 195.3 140 66.4
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 8.5e-42 176.0 107 72.9
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 2.0e-35 154.8 194 49.0
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 7.5e-22 109.8 80 73.8
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.9e-19 100.1 89 57.3
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 3.8e-18 97.4 79 60.8
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.1e-16 91.7 54 74.1
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 3.6e-16 90.9 146 41.8
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.8e-15 88.6 66 63.6
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 7.0e-12 76.6 110 44.5
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.6e-08 65.5 491 20.4
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 2.8e-08 64.7 59 52.5
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 5.2e-07 60.5 493 22.5
Nitab4.5_0000845g0220 Nicotiana tabacum HOM05D002279 ORTHO05D002644 8.9e-07 59.7 519 21.6
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 8.9e-07 59.7 385 22.1
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 8.9e-07 59.7 313 23.6
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 4.4e-06 57.4 352 22.4
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 7.5e-06 56.6 287 22.6
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 7.5e-06 56.6 287 22.6
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 7.5e-06 56.6 287 22.6


User provided reference genes

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