Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 8.0e-60 233.4 106 100.0
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 5.8e-26 120.9 90 64.4
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 1.6e-23 112.8 121 50.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 6.0e-23 110.9 127 47.2
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 3.0e-22 108.6 127 46.5
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 3.9e-22 108.2 127 45.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 5.0e-22 107.8 127 46.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 6.6e-22 107.5 121 47.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 6.6e-22 107.5 121 47.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 8.6e-22 107.1 127 45.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 1.1e-21 106.7 119 47.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 1.1e-21 106.7 121 47.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 1.5e-21 106.3 127 44.9
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.5e-21 106.3 128 44.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 1.5e-21 106.3 121 46.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 1.9e-21 105.9 127 45.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.9e-21 105.9 127 45.7
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 1.9e-21 105.9 121 47.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.9e-21 105.9 121 47.9
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 2.5e-21 105.5 127 44.9
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 2.5e-21 105.5 127 44.9
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 2.5e-21 105.5 127 44.9
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 3.3e-21 105.1 127 44.1
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 3.3e-21 105.1 127 44.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 4.3e-21 104.8 127 45.7
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 4.3e-21 104.8 121 47.1
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 4.3e-21 104.8 121 47.1
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 4.3e-21 104.8 127 44.1
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 4.3e-21 104.8 127 44.1
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 4.3e-21 104.8 127 43.3
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 4.3e-21 104.8 127 43.3
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 5.6e-21 104.4 121 45.5
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 5.6e-21 104.4 121 46.3
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 5.6e-21 104.4 127 44.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 7.3e-21 104.0 121 47.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 7.3e-21 104.0 127 43.3
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 7.3e-21 104.0 127 43.3
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 7.3e-21 104.0 122 45.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 7.3e-21 104.0 121 47.9
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 9.5e-21 103.6 127 43.3
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 9.5e-21 103.6 127 43.3
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 9.5e-21 103.6 127 43.3
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 9.5e-21 103.6 127 44.9
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 1.2e-20 103.2 125 44.8
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 1.2e-20 103.2 127 43.3
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-20 103.2 121 45.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 1.6e-20 102.8 127 44.1
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.6e-20 102.8 127 43.3
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.6e-20 102.8 127 43.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.6e-20 102.8 127 43.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 2.1e-20 102.4 127 43.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 2.1e-20 102.4 121 44.6
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.1e-20 102.4 121 47.1
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.1e-20 102.4 121 46.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.1e-20 102.4 121 46.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.1e-20 102.4 121 46.3
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.1e-20 102.4 127 43.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 2.1e-20 102.4 127 43.3
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 2.1e-20 102.4 121 47.9
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.8e-20 102.1 121 46.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.8e-20 102.1 127 42.5
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 2.8e-20 102.1 119 45.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 3.6e-20 101.7 127 44.1
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 4.7e-20 101.3 121 44.6
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 4.7e-20 101.3 121 43.8
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 4.7e-20 101.3 127 44.1
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 4.7e-20 101.3 127 43.3
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 6.2e-20 100.9 119 45.4
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 6.2e-20 100.9 121 45.5
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 6.2e-20 100.9 127 43.3
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 8.1e-20 100.5 127 43.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 8.1e-20 100.5 119 46.2
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 8.1e-20 100.5 127 43.3
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 1.1e-19 100.1 127 42.5
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 1.4e-19 99.8 121 43.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.4e-19 99.8 121 44.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.8e-19 99.4 121 44.6
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 1.8e-19 99.4 128 43.8
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.8e-19 99.4 119 46.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 2.3e-19 99.0 121 43.8
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.3e-19 99.0 127 43.3
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.3e-19 99.0 121 43.8
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 3.1e-19 98.6 121 43.8
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 3.1e-19 98.6 121 43.8
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 3.1e-19 98.6 121 43.8
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 3.1e-19 98.6 122 45.1
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 4.0e-19 98.2 122 45.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.0e-19 98.2 127 43.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 4.0e-19 98.2 127 43.3
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 4.0e-19 98.2 127 43.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 4.0e-19 98.2 128 43.0
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 5.2e-19 97.8 121 43.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 5.2e-19 97.8 127 43.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.2e-19 97.8 121 43.8
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 8.9e-19 97.1 121 43.0
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 8.9e-19 97.1 121 43.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 8.9e-19 97.1 121 46.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 8.9e-19 97.1 105 49.5
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 8.9e-19 97.1 121 44.6
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 1.2e-18 96.7 121 45.5
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 1.2e-18 96.7 119 43.7
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.2e-18 96.7 121 45.5
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 1.2e-18 96.7 124 43.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.2e-18 96.7 127 42.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 1.5e-18 96.3 121 43.0
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 1.5e-18 96.3 121 43.0
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 2.0e-18 95.9 121 46.3
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 2.0e-18 95.9 119 44.5
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 2.6e-18 95.5 127 42.5
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 2.6e-18 95.5 128 42.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 3.4e-18 95.1 121 43.0
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 3.4e-18 95.1 121 43.0
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 3.4e-18 95.1 121 43.0
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 3.4e-18 95.1 121 43.8
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 3.4e-18 95.1 128 43.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 3.4e-18 95.1 121 43.8
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 3.4e-18 95.1 121 43.0
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 5.8e-18 94.4 101 50.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 5.8e-18 94.4 121 43.0
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 9.8e-18 93.6 121 45.5
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 2.2e-17 92.4 127 41.7
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 3.7e-17 91.7 121 42.1
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 3.7e-17 91.7 121 42.1
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 5.4e-16 87.8 121 41.3
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 7.1e-16 87.4 122 41.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 2.1e-15 85.9 121 40.5
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 2.1e-15 85.9 121 39.7
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 1.3e-14 83.2 111 44.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 2.3e-14 82.4 131 38.2
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 2.3e-14 82.4 109 40.4
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 5.1e-14 81.3 125 40.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 3.3e-13 78.6 56 66.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 3.1e-11 72.0 121 34.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.7e-09 66.2 128 33.6
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.9e-09 65.5 120 34.2
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.7e-07 58.9 122 32.0
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.5e-07 58.5 122 33.6


User provided reference genes

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