Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.4e-98 362.1 173 100.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 4.6e-49 198.4 149 66.4
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 7.2e-42 174.5 149 58.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 1.0e-40 170.6 148 55.4
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 1.4e-40 170.2 149 56.4
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 1.4e-40 170.2 148 54.7
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 1.8e-40 169.9 149 56.4
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 1.8e-40 169.9 149 56.4
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 2.3e-40 169.5 148 55.4
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 5.1e-40 168.3 148 57.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 8.8e-40 167.5 148 58.1
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 2.0e-39 166.4 149 54.4
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 2.5e-39 166.0 148 56.8
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 2.5e-39 166.0 148 56.8
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 3.3e-39 165.6 149 54.4
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 4.3e-39 165.2 148 56.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 4.3e-39 165.2 149 53.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 4.3e-39 165.2 149 55.7
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 4.3e-39 165.2 148 54.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 5.7e-39 164.9 148 54.1
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 5.7e-39 164.9 149 54.4
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 7.4e-39 164.5 148 54.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 7.4e-39 164.5 148 54.7
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 7.4e-39 164.5 148 55.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 9.7e-39 164.1 148 58.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 9.7e-39 164.1 148 58.1
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.3e-38 163.7 148 56.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 1.7e-38 163.3 148 55.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 1.7e-38 163.3 150 55.3
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.2e-38 162.9 149 56.4
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.2e-38 162.9 148 56.1
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 2.2e-38 162.9 149 57.0
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 2.8e-38 162.5 148 54.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 4.8e-38 161.8 148 56.1
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 8.2e-38 161.0 148 56.1
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 1.1e-37 160.6 151 53.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.1e-37 160.6 148 55.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 1.4e-37 160.2 148 54.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 1.4e-37 160.2 149 54.4
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 1.8e-37 159.8 149 55.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.8e-37 159.8 149 57.0
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.8e-37 159.8 149 57.0
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.8e-37 159.8 149 57.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 1.8e-37 159.8 148 53.4
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 3.1e-37 159.1 149 56.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 3.1e-37 159.1 148 54.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.1e-37 159.1 148 55.4
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 3.1e-37 159.1 148 54.7
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 3.1e-37 159.1 148 54.7
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 4.1e-37 158.7 149 55.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.1e-37 158.7 149 55.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 4.1e-37 158.7 149 55.0
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 5.3e-37 158.3 149 56.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 5.3e-37 158.3 149 56.4
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 5.3e-37 158.3 149 56.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 5.3e-37 158.3 149 53.7
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 5.3e-37 158.3 149 53.7
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 5.3e-37 158.3 148 53.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 6.9e-37 157.9 149 53.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 6.9e-37 157.9 149 55.0
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 6.9e-37 157.9 148 56.1
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 9.1e-37 157.5 148 56.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 9.1e-37 157.5 149 53.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 9.1e-37 157.5 149 51.7
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 9.1e-37 157.5 149 54.4
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 9.1e-37 157.5 148 52.7
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 9.1e-37 157.5 150 54.7
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.2e-36 157.1 148 53.4
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 1.2e-36 157.1 148 53.4
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 1.2e-36 157.1 153 53.6
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.2e-36 157.1 148 54.1
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.5e-36 156.8 148 54.7
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 1.5e-36 156.8 154 53.2
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 2.0e-36 156.4 148 54.1
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 2.6e-36 156.0 150 52.7
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 2.6e-36 156.0 153 53.6
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 2.6e-36 156.0 148 54.1
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 2.6e-36 156.0 149 53.0
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 3.4e-36 155.6 148 52.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 3.4e-36 155.6 148 54.1
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 3.4e-36 155.6 149 53.7
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 3.4e-36 155.6 149 53.0
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 3.4e-36 155.6 148 53.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 4.5e-36 155.2 149 54.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 4.5e-36 155.2 149 54.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 4.5e-36 155.2 149 54.4
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 5.9e-36 154.8 149 53.0
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 5.9e-36 154.8 148 54.1
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 5.9e-36 154.8 150 53.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 7.7e-36 154.5 154 53.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 7.7e-36 154.5 149 53.7
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 7.7e-36 154.5 149 54.4
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 7.7e-36 154.5 149 53.7
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 7.7e-36 154.5 150 54.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 7.7e-36 154.5 149 52.3
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 1.0e-35 154.1 149 54.4
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 1.0e-35 154.1 153 54.9
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 1.3e-35 153.7 150 55.3
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 1.3e-35 153.7 148 51.4
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 1.3e-35 153.7 148 54.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 1.7e-35 153.3 148 54.7
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 1.7e-35 153.3 149 51.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 1.7e-35 153.3 148 52.7
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.7e-35 153.3 149 53.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.7e-35 153.3 150 54.0
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 2.2e-35 152.9 150 55.3
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 2.2e-35 152.9 150 55.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 2.2e-35 152.9 149 54.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 2.2e-35 152.9 149 53.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 3.8e-35 152.1 148 54.1
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 6.5e-35 151.4 148 54.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 8.5e-35 151.0 148 52.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 8.5e-35 151.0 149 53.7
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 1.1e-34 150.6 149 51.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 1.4e-34 150.2 148 54.1
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 1.4e-34 150.2 148 55.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 3.2e-34 149.1 150 53.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 3.2e-34 149.1 148 52.0
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 3.2e-34 149.1 148 49.3
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 4.2e-34 148.7 148 54.1
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 4.2e-34 148.7 148 52.0
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 4.2e-34 148.7 149 55.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 7.2e-34 147.9 153 49.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 1.0e-32 144.1 149 49.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 2.3e-32 142.9 155 49.7
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 5.7e-31 138.3 149 49.0
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 7.4e-31 137.9 156 48.7
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-27 126.7 126 53.2
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 6.5e-27 124.8 118 55.1
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 2.5e-26 122.9 106 59.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 5.5e-26 121.7 149 48.3
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 4.0e-24 115.5 151 43.7
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.1e-23 114.0 129 48.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.0e-23 113.2 148 41.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 5.7e-23 111.7 149 44.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 5.7e-23 111.7 146 43.8
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 5.7e-23 111.7 150 45.3
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.8e-21 106.7 86 59.3
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.4e-21 106.3 145 42.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.8e-08 63.5 73 47.9


User provided reference genes

Program Settings