Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 1.0e-224 783.1 391 100.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.0e-160 570.5 373 75.6
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.7e-160 569.7 322 85.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.2e-158 563.5 371 76.3
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 3.5e-145 518.8 329 78.1
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 3.4e-140 502.3 416 61.8
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 6.0e-137 491.5 336 70.8
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.3e-135 485.3 338 70.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.6e-134 483.4 336 70.5
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 3.6e-134 482.3 337 69.4
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.1e-133 480.7 362 65.2
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.4e-133 480.3 343 69.1
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.4e-133 480.3 385 64.7
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.4e-133 480.3 354 67.2
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.4e-133 479.6 328 71.3
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 3.1e-133 479.2 362 66.0
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 3.1e-133 479.2 366 65.3
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 4.0e-133 478.8 375 64.5
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 5.2e-133 478.4 337 69.4
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 8.9e-133 477.6 380 64.7
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.2e-132 477.2 371 63.1
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 2.6e-132 476.1 344 67.7
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 4.4e-132 475.3 386 63.0
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 5.8e-132 474.9 374 65.5
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 9.9e-132 474.2 385 63.9
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 9.9e-132 474.2 328 68.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.9e-131 472.6 328 70.4
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 6.4e-131 471.5 377 63.4
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 3.2e-130 469.2 334 68.0
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.2e-130 469.2 374 64.4
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.4e-130 468.4 326 68.7
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 9.3e-130 467.6 371 64.7
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.2e-129 467.2 334 67.1
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.7e-129 466.1 372 63.4
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 4.6e-129 465.3 377 62.3
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 4.6e-129 465.3 340 66.8
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 6.0e-129 464.9 326 68.4
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 1.0e-128 464.2 370 61.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.3e-128 463.8 337 66.8
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 1.7e-128 463.4 369 62.3
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.3e-128 463.0 334 65.6
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.0e-128 462.6 354 65.5
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 3.0e-128 462.6 354 65.5
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.9e-128 462.2 338 66.6
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 3.9e-128 462.2 362 65.2
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 5.1e-128 461.8 375 61.9
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 5.1e-128 461.8 373 62.2
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 3.3e-127 459.1 358 65.1
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 4.3e-127 458.8 364 62.6
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 4.3e-127 458.8 374 60.7
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 5.6e-127 458.4 334 65.3
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 9.6e-127 457.6 330 67.3
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 9.6e-127 457.6 335 65.4
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.3e-126 457.2 374 62.0
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.8e-126 456.1 364 62.4
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 4.8e-126 455.3 334 64.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 4.8e-126 455.3 370 62.2
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.1e-125 454.1 335 64.5
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 2.4e-125 453.0 359 63.0
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.1e-125 452.6 362 62.2
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.1e-125 452.6 335 66.6
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 4.0e-125 452.2 336 66.1
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.0e-124 449.9 338 65.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.0e-124 449.9 339 66.7
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.6e-124 448.0 341 65.4
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.2e-123 446.4 342 61.4
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.9e-123 445.3 334 63.8
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 4.9e-123 445.3 329 66.0
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.9e-122 443.4 323 66.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.9e-122 443.4 333 64.6
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 2.4e-122 443.0 336 61.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.4e-122 443.0 341 64.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.2e-122 442.6 335 66.6
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 7.1e-122 441.4 337 65.3
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.7e-121 439.5 325 64.0
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.3e-120 437.2 321 65.7
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 2.3e-120 436.4 319 66.1
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 2.5e-119 433.0 376 59.6
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 4.3e-119 432.2 345 63.2
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 5.6e-119 431.8 358 62.0
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.6e-118 430.3 297 70.4
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 5.3e-117 425.2 355 61.1
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-116 424.1 335 59.1
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 7.6e-116 421.4 376 59.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.8e-115 419.1 332 62.3
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 8.4e-115 417.9 332 62.0
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.9e-114 416.8 336 61.6
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 7.1e-114 414.8 389 56.6
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.5e-113 412.5 362 58.0
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 7.9e-113 411.4 349 56.4
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 5.1e-112 408.7 325 61.8
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 8.7e-112 407.9 341 57.5
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 5.6e-111 405.2 399 52.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 4.8e-110 402.1 271 71.6
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.1e-109 399.4 320 61.2
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 6.9e-109 398.3 375 55.7
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.2e-108 397.5 361 57.6
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.5e-108 397.1 306 64.4
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.5e-108 397.1 306 64.4
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 2.0e-108 396.7 304 66.1
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 6.5e-107 391.7 300 64.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 6.5e-107 391.7 269 68.4
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 3.9e-104 382.5 357 55.2
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 5.7e-103 378.6 268 67.9
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 2.1e-102 376.7 329 57.1
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 2.8e-102 376.3 297 63.6
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.4e-101 373.2 291 61.5
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 5.3e-101 372.1 301 61.5
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 9.0e-101 371.3 329 54.7
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.4e-100 369.4 242 70.2
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.4e-100 369.4 329 58.4
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 3.8e-99 365.9 398 51.5
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.8e-94 349.0 320 56.6
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.4e-93 347.4 339 49.9
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.2e-92 344.4 249 65.5
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.5e-92 344.0 332 51.5
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 7.2e-90 335.1 367 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 8.8e-88 328.2 277 56.7
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 8.8e-88 328.2 197 81.7
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 3.1e-85 319.7 255 58.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.2e-84 317.8 278 52.2
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 4.2e-82 309.3 201 76.1
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 5.1e-80 302.4 208 67.8
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 8.8e-72 275.0 298 44.6
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 7.5e-71 271.9 180 71.7
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-69 268.1 206 63.6
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 8.8e-64 248.4 399 40.9
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.6e-63 246.9 309 45.0
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 2.6e-63 246.9 249 49.8
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.7e-57 226.9 281 43.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 9.8e-55 218.4 139 75.5
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 6.3e-54 215.7 258 41.1
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.5e-50 203.8 185 54.6
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.4e-48 198.0 289 38.4
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 2.3e-48 197.2 203 52.7
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 5.4e-45 186.0 162 52.5
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.8e-40 169.1 131 61.8
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 3.4e-39 166.8 213 44.1
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 9.8e-39 165.2 363 32.8
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.3e-38 164.9 215 43.7
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.8e-32 144.4 178 42.1
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 4.6e-28 129.8 81 76.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 8.1e-25 119.0 123 51.2
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 3.4e-23 113.6 121 51.2
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 9.9e-23 112.1 307 29.3
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 8.4e-22 109.0 183 38.3
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.6e-15 87.4 91 46.2
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.6e-15 87.4 91 46.2
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 4.4e-15 86.7 71 54.9
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.9e-13 81.3 113 42.5
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 7.8e-12 75.9 59 66.1
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 3.0e-11 73.9 50 70.0
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 8.1e-09 65.9 58 58.6
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.4e-08 64.3 40 65.0


User provided reference genes

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