Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 0.0e+00 3118.6 1800 100.0
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 2.0e-240 837.4 1691 42.6
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.2e-221 775.0 1973 36.6
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 6.7e-191 672.9 1795 34.2
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.7e-141 508.8 852 45.7
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 8.0e-136 490.0 1027 42.9
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.2e-134 486.1 853 45.4
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 1.5e-134 485.7 823 46.5
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 3.4e-134 484.6 913 43.8
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.1e-132 477.6 833 45.7
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.4e-132 477.2 772 47.4
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.0e-131 475.3 786 48.1
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.0e-130 473.0 934 41.5
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.3e-130 472.6 764 49.1
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 2.3e-130 471.9 948 41.4
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.6e-128 464.5 903 42.1
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.0e-127 463.0 864 44.3
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.8e-127 462.2 931 41.1
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.9e-125 454.9 906 41.6
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.1e-124 453.0 965 41.5
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-124 453.0 906 41.5
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.9e-124 452.2 974 41.2
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.9e-124 452.2 878 41.8
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 9.2e-124 449.9 878 41.7
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 9.2e-124 449.9 774 46.0
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.0e-123 448.7 783 46.1
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 3.5e-123 448.0 940 40.2
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.7e-122 445.7 846 44.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 1.9e-121 442.2 937 42.6
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.3e-121 441.4 921 42.3
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.2e-120 439.5 783 45.8
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.6e-120 439.1 904 40.6
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 4.7e-120 437.6 930 36.7
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 5.2e-119 434.1 779 44.7
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 4.4e-118 431.0 1216 35.5
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 5.8e-118 430.6 730 46.7
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 5.8e-118 430.6 915 43.4
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 9.8e-118 429.9 986 39.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.3e-117 429.5 906 41.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.3e-117 429.5 1141 36.7
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.7e-117 429.1 884 42.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 8.3e-117 426.8 874 43.9
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 5.4e-116 424.1 702 47.7
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.2e-115 422.9 1058 37.2
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.6e-115 421.0 1190 35.1
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.0e-114 419.9 1130 35.7
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.0e-114 419.9 1774 31.2
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.9e-113 415.6 782 44.9
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 7.3e-113 413.7 800 42.9
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.2e-112 412.9 870 41.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.6e-112 411.4 815 40.9
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.6e-112 411.4 1789 30.5
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 8.1e-112 410.2 717 41.7
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 8.1e-112 410.2 1199 35.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.1e-111 409.8 1210 36.7
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.6e-110 405.2 819 43.6
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.4e-110 404.8 1216 34.8
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.3e-109 402.9 864 41.3
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.9e-109 401.0 1023 37.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.1e-108 399.8 770 45.2
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 7.1e-108 397.1 760 43.4
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.6e-107 396.0 745 44.0
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.6e-107 396.0 752 43.8
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 4.6e-107 394.4 783 45.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 8.6e-106 390.2 816 40.8
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 2.5e-105 388.7 1172 35.0
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.4e-103 382.9 598 45.5
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.4e-103 382.9 772 42.0
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 3.1e-103 381.7 1014 36.2
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 3.1e-103 381.7 1014 36.2
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.5e-102 379.4 748 41.3
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-102 379.0 808 41.0
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.4e-102 377.9 981 33.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.8e-101 374.8 804 41.5
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.1e-100 373.2 789 39.5
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.9e-100 372.5 809 41.4
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.2e-100 371.7 729 42.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.6e-99 369.4 726 40.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 3.5e-99 368.2 492 52.8
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 8.7e-98 363.6 737 40.3
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 2.5e-97 362.1 1545 30.4
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 5.6e-97 360.9 794 40.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 9.6e-97 360.1 796 39.3
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 3.6e-96 358.2 760 41.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 2.4e-95 355.5 535 47.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 2.4e-95 355.5 535 47.7
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 5.8e-94 350.9 1042 34.6
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.2e-93 349.0 778 40.7
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 6.4e-93 347.4 822 34.5
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.1e-91 342.4 779 39.8
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.5e-89 336.3 458 54.4
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 6.2e-88 330.9 1078 33.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.1e-87 330.1 987 34.1
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.3e-87 327.8 777 34.6
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.3e-85 323.2 751 40.6
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.4e-84 319.7 829 39.2
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 5.3e-79 301.2 407 45.5
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.9e-77 294.7 455 42.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 7.1e-76 290.8 713 38.1
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.0e-74 285.4 787 36.7
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 4.3e-73 281.6 691 34.7
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 6.3e-72 277.7 714 37.7
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 5.3e-71 274.6 909 32.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.0e-70 272.7 528 44.7
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.5e-68 265.8 848 35.5
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.3e-65 255.0 596 39.6
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 6.3e-64 251.1 870 32.8
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 4.5e-62 245.0 340 52.9
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 6.5e-61 241.1 658 33.0
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 6.1e-59 234.6 767 32.6
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.2e-56 226.1 238 52.5
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 5.3e-55 221.5 725 35.9
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 3.8e-53 215.3 517 37.3
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.1e-49 203.8 1494 26.6
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 2.0e-46 193.0 488 38.1
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.6e-43 183.3 556 37.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 7.5e-41 174.5 202 64.4
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.9e-36 159.8 337 39.2
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.4e-33 149.1 223 43.9
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.1e-31 142.5 514 29.2
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 4.5e-30 138.7 110 68.2
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 7.5e-25 121.3 127 54.3
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.6e-22 113.6 70 78.6
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.4e-18 100.5 215 32.6
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.7e-16 92.4 420 28.6
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.3e-13 84.0 125 39.2
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.3e-13 83.2 128 35.9
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.3e-12 79.3 920 21.6
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.2e-11 77.4 239 29.7
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 2.8e-11 76.3 105 40.0
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.1e-10 74.3 93 45.2
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.9e-08 66.2 167 49.7
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.7e-06 59.7 52 51.9


User provided reference genes

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