Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18471 Striga asiatica HOM05D001874 ORTHO05D398969 1.6e-61 239.2 119 100.0
SGA_v2.0_scaffold227G43211 Striga asiatica HOM05D001874 ORTHO05D401577 5.7e-30 134.4 94 73.4
SalBow8G1324 Salvia bowleyana HOM05D001874 ORTHO05D002166 1.4e-15 86.7 91 58.2
SGA_v2.0_scaffold223G42829 Striga asiatica HOM05D001874 ORTHO05D002166 1.1e-14 83.6 91 57.1
Migut.M01864 Erythranthe guttata HOM05D001874 ORTHO05D002166 1.5e-14 83.2 91 54.9
MSTRG.7517 Avicennia marina HOM05D001874 ORTHO05D002166 9.7e-14 80.5 91 53.8
MSTRG.16270 Avicennia marina HOM05D001874 ORTHO05D002166 3.7e-13 78.6 89 53.9
Oeu040092.1 Olea europaea HOM05D001874 ORTHO05D002166 5.9e-11 71.2 95 49.5
Ciclev10015815m.g Citrus clementina HOM05D001874 ORTHO05D002166 2.2e-10 69.3 93 47.3
Actinidia19539 Actinidia chinensis HOM05D001874 ORTHO05D002166 6.5e-10 67.8 91 48.4
Ca_08240_v3 Cicer arietinum L. HOM05D001874 ORTHO05D002166 6.5e-10 67.8 92 46.7
Dinv25609 Davidia involucrata HOM05D001874 ORTHO05D002166 6.5e-10 67.8 91 47.3
Medtr7g084810 Medicago truncatula HOM05D001874 ORTHO05D002166 8.5e-10 67.4 95 45.3
Peaxi162Scf00827g00032 Petunia axillaris HOM05D001874 ORTHO05D002166 2.5e-09 65.9 93 46.2
Carub.0005s0465 Capsella rubella HOM05D001874 ORTHO05D002166 4.2e-09 65.1 91 45.1
PGR042G1329 Punica granatum HOM05D001874 ORTHO05D002166 4.2e-09 65.1 91 47.3
TPR.G20661 Trifolium pratense HOM05D001874 ORTHO05D002166 4.2e-09 65.1 94 44.7
Actinidia37704 Actinidia chinensis HOM05D001874 ORTHO05D002166 5.5e-09 64.7 91 46.2
Aqoxy5G02949 Aquilegia oxysepala HOM05D001874 ORTHO05D002166 5.5e-09 64.7 93 45.2
Thhalv10005280m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 5.5e-09 64.7 91 45.1
Nitab4.5_0009395g0010 Nicotiana tabacum HOM05D001874 ORTHO05D002166 5.5e-09 64.7 93 46.2
PGSC0003DMG400009907 Solanum tuberosum HOM05D001874 ORTHO05D002166 5.5e-09 64.7 93 46.2
Atru.chr6.2741 Acer truncatum HOM05D001874 ORTHO05D002166 7.2e-09 64.3 89 47.2
CANSAT64G2317 Cannabis sativa HOM05D001874 ORTHO05D002166 7.2e-09 64.3 91 44.0
Cc07_g01410 Coffea canephora HOM05D001874 ORTHO05D002166 9.4e-09 63.9 93 44.1
Lsat_1_v5_gn_2_95200 Lactuca sativa HOM05D001874 ORTHO05D002166 9.4e-09 63.9 106 40.6
MD09G1000600 Malus domestica HOM05D001874 ORTHO05D002166 9.4e-09 63.9 97 43.3
MD09G1142200 Malus domestica HOM05D001874 ORTHO05D002166 9.4e-09 63.9 95 43.2
THA.LOC104805293 Tarenaya hassleriana HOM05D001874 ORTHO05D002166 9.4e-09 63.9 91 46.2
VMungo1383G1741 Vigna mungo HOM05D001874 ORTHO05D002166 9.4e-09 63.9 94 43.6
ClCG05G012420 Citrullus lanatus HOM05D001874 ORTHO05D002166 1.2e-08 63.5 91 46.2
MELO3C014751.2 Cucumis melo HOM05D001874 ORTHO05D002166 1.2e-08 63.5 91 46.2
CsaV3_3G020120 Cucumis sativus L. HOM05D001874 ORTHO05D002166 1.2e-08 63.5 91 46.2
Sp2g15760 Schrenkiella parvula HOM05D001874 ORTHO05D002166 1.2e-08 63.5 91 44.0
CARHR013240 Cardamine hirsuta HOM05D001874 ORTHO05D002166 1.6e-08 63.2 91 45.1
CARHR013270 Cardamine hirsuta HOM05D001874 ORTHO05D002166 1.6e-08 63.2 91 45.1
Gohir.A03G095400 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.6e-08 63.2 93 45.2
Gohir.D02G113700 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.6e-08 63.2 93 45.2
Gorai.005G129400 Gossypium raimondii HOM05D001874 ORTHO05D002166 1.6e-08 63.2 93 45.2
HanXRQChr07g0197981 Helianthus annuus HOM05D001874 ORTHO05D002166 1.6e-08 63.2 113 38.9
AT3G26640 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 2.1e-08 62.8 91 44.0
Lj1g0026985 Lotus japonicus HOM05D001874 ORTHO05D002166 2.1e-08 62.8 97 43.3
HPP92_023103 Vanilla planifolia HOM05D001874 ORTHO05D002166 2.1e-08 62.8 91 46.2
Hma1.2p1_0868F.1_g230400 Hydrangea macrophylla HOM05D001874 ORTHO05D002166 2.7e-08 62.4 90 43.3
Sed0012223 Sechium edule HOM05D001874 ORTHO05D002166 2.7e-08 62.4 91 45.1
Aa31LG1G1870 Aethionema arabicum HOM05D001874 ORTHO05D002166 3.6e-08 62.0 91 45.1
Phvul.001G098000 Phaseolus vulgaris HOM05D001874 ORTHO05D002166 3.6e-08 62.0 94 42.6
Solyc04g082470.3 Solanum lycopersicum HOM05D001874 ORTHO05D002166 4.7e-08 61.6 93 41.9
Thecc.04G053000 Theobroma cacao HOM05D001874 ORTHO05D002166 4.7e-08 61.6 91 44.0
CiPaw.03G000100 Carya illinoinensis HOM05D001874 ORTHO05D002166 6.1e-08 61.2 93 43.0
Haze_14992 Corylus avellana HOM05D001874 ORTHO05D002166 6.1e-08 61.2 93 43.0
Migut.H01347 Erythranthe guttata HOM05D001874 ORTHO05D002166 6.1e-08 61.2 91 46.2
MD17G1003400 Malus domestica HOM05D001874 ORTHO05D002166 6.1e-08 61.2 96 42.7
SHI00495 Sapria himalayana HOM05D001874 ORTHO05D002166 6.1e-08 61.2 91 42.9
TAR374G1430 Trochodendron aralioides HOM05D001874 ORTHO05D002166 6.1e-08 61.2 93 43.0
TAR636G0637 Trochodendron aralioides HOM05D001874 ORTHO05D002166 6.1e-08 61.2 93 44.1
EL10Ac6g13911 Beta vulgaris HOM05D001874 ORTHO05D002166 7.9e-08 60.8 91 45.1
Thhalv10008091m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 7.9e-08 60.8 91 44.0
Nn3g16189 Nelumbo nucifera HOM05D001874 ORTHO05D002166 7.9e-08 60.8 93 43.0
Potri.014G140700 Populus trichocarpa HOM05D001874 ORTHO05D002166 7.9e-08 60.8 93 43.0
Sabra14G0106100 Salix brachista HOM05D001874 ORTHO05D002166 7.9e-08 60.8 93 43.0
AT1G12910 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 44.0
A09p63530 Brassica napus HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 44.0
C08p47030 Brassica napus HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 44.0
BolC8t52243H Brassica oleracea HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 44.0
BraA09t41704Z Brassica rapa HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 44.0
Carub.0001s1268 Capsella rubella HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 42.9
COL.COLO4_13412 Corchorus olitorius HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 42.9
Manes.11G072300 Manihot esculenta HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 42.9
QL02p068113 Quercus lobata HOM05D001874 ORTHO05D002166 1.0e-07 60.5 92 43.5
Sp1g11480 Schrenkiella parvula HOM05D001874 ORTHO05D002166 1.0e-07 60.5 91 44.0
Sopen04g036080 Solanum pennellii HOM05D001874 ORTHO05D002166 1.0e-07 60.5 93 40.9
MBI11_g40921_MAGBIO Magnolia biondii HOM05D001874 ORTHO05D002166 1.4e-07 60.1 90 43.3
Ah.03g136520 Amaranthus hybridus HOM05D001874 ORTHO05D002166 1.8e-07 59.7 90 44.4
ECA238G4071 Erigeron canadensis HOM05D001874 ORTHO05D002166 1.8e-07 59.7 105 38.1
Prupe.3G315600 Prunus persica HOM05D001874 ORTHO05D002166 1.8e-07 59.7 99 41.4
AL1G24550 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 2.3e-07 59.3 91 42.9
Cfa007129 Carpinus fangiana HOM05D001874 ORTHO05D002166 2.3e-07 59.3 93 41.9
Lalb_Chr14g0364201 Lupinus albus HOM05D001874 ORTHO05D002166 2.3e-07 59.3 96 39.6
Potri.002G220500 Populus trichocarpa HOM05D001874 ORTHO05D002166 2.3e-07 59.3 93 41.9
Glyma.19G106900 Glycine max HOM05D001874 ORTHO05D002166 3.0e-07 58.9 91 42.9
AL5G15480 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 3.9e-07 58.5 91 40.7
Duzib212G0604 Durio zibethinus HOM05D001874 ORTHO05D002166 3.9e-07 58.5 90 42.2
Glyma.16G044800 Glycine max HOM05D001874 ORTHO05D002166 3.9e-07 58.5 91 42.9
Manes.04G096000 Manihot esculenta HOM05D001874 ORTHO05D002166 3.9e-07 58.5 91 40.7
TWI34G1897 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 3.9e-07 58.5 93 40.9
CSS0042189 Camellia sinensis var. sinensis HOM05D001874 ORTHO05D002166 5.1e-07 58.2 111 37.8
CSS0049078 Camellia sinensis var. sinensis HOM05D001874 ORTHO05D002166 5.1e-07 58.2 111 37.8
AUR62004940 Chenopodium quinoa HOM05D001874 ORTHO05D002166 5.1e-07 58.2 89 43.8
Rhsim08G0037100 Rhododendron simsii HOM05D001874 ORTHO05D002166 5.1e-07 58.2 93 41.9
FAN05G5250 Fragaria x ananassa HOM05D001874 ORTHO05D002166 6.7e-07 57.8 93 41.9
SEGI_09231 Sequoiadendron giganteum HOM05D001874 ORTHO05D002166 6.7e-07 57.8 89 43.8
TWI32G0051 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 6.7e-07 57.8 93 39.8
AUR62017460 Chenopodium quinoa HOM05D001874 ORTHO05D002166 8.8e-07 57.4 89 43.8
AUR62032528 Chenopodium quinoa HOM05D001874 ORTHO05D002166 8.8e-07 57.4 89 43.8
DCAR_016686 Daucus carota HOM05D001874 ORTHO05D002166 8.8e-07 57.4 89 44.9
FvH4_6g54470 Fragaria vesca HOM05D001874 ORTHO05D002166 8.8e-07 57.4 93 40.9
FAN14G4833 Fragaria x ananassa HOM05D001874 ORTHO05D002166 8.8e-07 57.4 93 40.9
RcHm_v2.0_Chr2g0176751 Rosa chinensis HOM05D001874 ORTHO05D002166 8.8e-07 57.4 91 42.9
Gohir.A10G126550 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.1e-06 57.0 89 42.7
Gohir.D10G140100 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.1e-06 57.0 89 42.7
Gorai.011G155800 Gossypium raimondii HOM05D001874 ORTHO05D002166 1.1e-06 57.0 89 42.7
vmacro22929 Vaccinium macrocarpon HOM05D001874 ORTHO05D002166 1.1e-06 57.0 95 42.1
FAN02G2214 Fragaria x ananassa HOM05D001874 ORTHO05D002166 1.5e-06 56.6 93 40.9
Sc03g0005430 Simmondsia chinensis HOM05D001874 ORTHO05D002166 1.5e-06 56.6 91 41.8
arahy.Tifrunner.gnm1.ann1.KT7N93 Arachis hypogaea HOM05D001874 ORTHO05D002166 2.6e-06 55.8 110 39.1
FAN09G4781 Fragaria x ananassa HOM05D001874 ORTHO05D002166 2.6e-06 55.8 93 39.8
Lalb_Chr24g0403031 Lupinus albus HOM05D001874 ORTHO05D002166 2.6e-06 55.8 96 38.5
arahy.Tifrunner.gnm1.ann1.RBX16R Arachis hypogaea HOM05D001874 ORTHO05D002166 4.4e-06 55.1 110 37.3
Dinv33257 Davidia involucrata HOM05D001874 ORTHO05D002166 7.4e-06 54.3 37 73.0
SMO367G0275 Selaginella moellendorffii HOM05D001874 ORTHO05D002166 9.7e-06 53.9 89 40.4


User provided reference genes

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