Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 2.6e-62 241.9 123 100.0
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 1.2e-27 126.7 90 76.7
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 1.3e-26 123.2 90 72.2
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 8.7e-26 120.6 90 71.1
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 1.4e-23 113.2 98 63.3
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 2.4e-23 112.5 90 67.8
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 1.5e-22 109.8 90 62.2
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 1.5e-22 109.8 90 62.2
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 2.6e-22 109.0 90 62.2
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 2.2e-21 105.9 90 62.2
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 8.5e-21 104.0 91 63.7
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.9e-20 102.8 90 62.2
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.9e-20 102.8 90 62.2
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 1.9e-20 102.8 91 63.7
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.5e-20 102.4 90 64.4
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 4.2e-20 101.7 90 62.2
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 4.2e-20 101.7 90 60.0
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 4.2e-20 101.7 90 61.1
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 4.2e-20 101.7 90 61.1
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 5.5e-20 101.3 90 60.0
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 7.2e-20 100.9 90 63.3
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 7.2e-20 100.9 90 62.2
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 2.1e-19 99.4 90 58.9
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.7e-19 99.0 90 61.1
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 3.6e-19 98.6 90 60.0
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 4.6e-19 98.2 90 60.0
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 6.1e-19 97.8 90 60.0
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 6.1e-19 97.8 90 60.0
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 6.1e-19 97.8 90 57.8
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 6.1e-19 97.8 90 60.0
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.0e-18 97.1 90 60.0
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.0e-18 97.1 99 59.6
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 1.8e-18 96.3 90 56.7
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.8e-18 96.3 90 58.9
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 2.3e-18 95.9 90 57.8
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 3.0e-18 95.5 90 58.9
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 3.0e-18 95.5 90 58.9
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 3.0e-18 95.5 90 57.8
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 5.1e-18 94.7 90 60.0
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 6.7e-18 94.4 90 58.9
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 6.7e-18 94.4 90 58.9
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 8.8e-18 94.0 90 58.9
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 8.8e-18 94.0 90 57.8
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 1.1e-17 93.6 90 58.9
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-17 92.4 98 54.1
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 2.5e-17 92.4 90 55.6
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 4.3e-17 91.7 90 57.8
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 5.7e-17 91.3 90 58.9
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 5.7e-17 91.3 98 53.1
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 7.4e-17 90.9 90 56.7
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 7.4e-17 90.9 90 57.8
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 9.7e-17 90.5 90 58.9
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 9.7e-17 90.5 90 56.7
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 9.7e-17 90.5 90 54.4
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 9.7e-17 90.5 90 56.7
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 9.7e-17 90.5 90 56.7
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.7e-16 89.7 90 56.7
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 1.7e-16 89.7 90 56.7
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 2.2e-16 89.4 90 56.7
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 3.7e-16 88.6 90 53.3
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 3.7e-16 88.6 90 53.3
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 3.7e-16 88.6 90 55.6
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 4.8e-16 88.2 90 53.3
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 4.8e-16 88.2 90 54.4
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 6.3e-16 87.8 91 53.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 6.3e-16 87.8 91 53.8
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 6.3e-16 87.8 90 55.6
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 6.3e-16 87.8 90 53.3
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 6.3e-16 87.8 90 51.1
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 8.2e-16 87.4 91 53.8
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 8.2e-16 87.4 91 53.8
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 8.2e-16 87.4 91 53.8
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 8.2e-16 87.4 90 55.6
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 8.2e-16 87.4 90 55.6
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 8.2e-16 87.4 91 52.7
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 1.1e-15 87.0 90 54.4
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 1.1e-15 87.0 90 51.1
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 1.8e-15 86.3 91 52.7
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 2.4e-15 85.9 91 52.7
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 3.1e-15 85.5 87 55.2
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 3.1e-15 85.5 90 55.6
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 4.1e-15 85.1 90 54.4
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 6.9e-15 84.3 90 52.2
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 6.9e-15 84.3 91 52.7
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 9.1e-15 84.0 90 52.2
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 9.1e-15 84.0 90 52.2
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 1.2e-14 83.6 91 50.5
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 1.5e-14 83.2 90 54.4
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 1.5e-14 83.2 92 54.3
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 2.0e-14 82.8 88 52.3
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 2.0e-14 82.8 88 52.3
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 2.0e-14 82.8 90 52.2
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 2.0e-14 82.8 90 52.2
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 2.0e-14 82.8 90 55.6
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 2.6e-14 82.4 90 52.2
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 2.6e-14 82.4 90 52.2
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 4.5e-14 81.6 90 51.1
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 4.5e-14 81.6 90 52.2
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 5.9e-14 81.3 90 54.4
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 1.0e-13 80.5 108 48.1
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.3e-13 80.1 91 49.5
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 2.2e-13 79.3 111 44.1
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 2.2e-13 79.3 90 51.1
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 2.2e-13 79.3 102 48.0
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 5.0e-13 78.2 90 50.0
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 3.2e-12 75.5 91 49.5
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 3.6e-11 72.0 90 44.4
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 4.7e-11 71.6 90 47.8
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 4.1e-07 58.5 91 41.8
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 4.1e-07 58.5 91 41.8
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 9.1e-07 57.4 90 43.3
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 2.0e-06 56.2 93 39.8
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 4.5e-06 55.1 92 38.0


User provided reference genes

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