Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.3e-191 672.9 355 100.0
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.2e-136 490.3 356 71.1
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 7.3e-134 481.1 363 69.1
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 6.2e-133 478.0 363 68.6
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 4.5e-123 445.3 364 64.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.4e-121 440.3 366 63.1
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 5.5e-121 438.3 361 62.6
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 2.1e-117 426.4 365 60.5
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 6.2e-117 424.9 366 60.7
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.1e-116 424.1 360 61.7
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.8e-116 423.3 375 59.7
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.4e-116 422.9 294 70.7
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.4e-116 422.9 375 59.7
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 3.1e-116 422.5 357 61.1
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 9.0e-116 421.0 361 61.5
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 4.5e-115 418.7 356 60.7
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 5.8e-115 418.3 281 71.2
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.0e-114 417.5 363 60.3
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.7e-114 416.8 370 59.7
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 2.2e-114 416.4 279 72.8
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 6.5e-114 414.8 353 61.2
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.1e-113 414.1 373 58.7
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.4e-113 413.7 356 61.2
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.5e-113 412.9 365 59.7
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 3.2e-113 412.5 355 60.0
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 3.2e-113 412.5 360 61.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.2e-112 410.6 361 60.1
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 2.1e-112 409.8 298 66.8
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 3.5e-112 409.1 381 58.8
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 6.1e-112 408.3 291 69.8
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 7.9e-112 407.9 276 71.4
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.0e-111 407.5 355 59.4
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 3.9e-111 405.6 366 60.7
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 6.7e-111 404.8 362 59.4
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 8.7e-111 404.4 349 61.3
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 7.4e-110 401.4 372 55.9
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 9.7e-110 401.0 277 69.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 8.2e-109 397.9 349 60.5
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.1e-108 397.5 358 59.5
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.1e-108 397.5 286 67.8
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.8e-108 396.7 354 59.3
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 5.3e-108 395.2 357 56.0
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.6e-107 392.9 351 59.0
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 4.5e-107 392.1 258 72.1
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 5.9e-107 391.7 275 68.4
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 5.9e-107 391.7 276 68.5
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 7.7e-107 391.3 274 69.3
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.7e-106 390.2 357 58.5
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 2.9e-106 389.4 276 67.0
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.9e-106 389.4 353 57.8
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 3.8e-106 389.0 295 66.4
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 6.5e-106 388.3 276 68.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.1e-105 387.5 271 69.4
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.4e-105 387.1 357 58.5
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.4e-105 387.1 259 70.7
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.4e-105 387.1 375 54.7
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.4e-105 387.1 376 55.3
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 4.2e-105 385.6 362 56.6
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 9.4e-105 384.4 253 73.1
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.6e-104 383.6 356 56.5
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.0e-103 380.9 360 57.5
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.3e-103 379.8 349 57.0
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.9e-103 379.0 288 65.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 6.7e-103 378.3 349 57.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 6.7e-103 378.3 296 63.9
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.1e-102 377.5 355 55.8
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.7e-102 374.4 366 55.5
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.7e-101 373.6 309 62.1
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.7e-101 373.6 240 73.3
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 4.8e-101 372.1 350 56.6
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.4e-100 369.8 364 54.4
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.4e-100 369.8 287 65.9
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 4.1e-100 369.0 292 63.7
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 5.3e-100 368.6 292 63.4
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.0e-99 366.7 293 61.4
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 4.5e-99 365.5 290 63.1
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 3.8e-98 362.5 289 61.6
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 8.5e-98 361.3 283 63.6
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.9e-97 360.1 276 65.2
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 5.5e-97 358.6 362 54.1
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 5.5e-97 358.6 276 65.6
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 4.7e-96 355.5 333 57.4
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 7.9e-96 354.8 304 62.2
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.0e-95 352.8 397 48.9
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 3.0e-95 352.8 356 55.9
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.5e-91 339.0 355 54.1
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.0e-90 335.5 275 61.8
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 3.0e-87 326.2 298 59.1
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 7.4e-86 321.6 286 56.6
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.4e-76 290.8 259 58.7
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 2.9e-74 283.1 244 55.7
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.9e-74 283.1 278 49.6
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 8.5e-74 281.6 239 56.1
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.3e-71 273.5 271 54.2
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.8e-68 263.8 355 45.4
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 7.0e-68 261.9 274 53.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.2e-67 261.2 246 48.8
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.7e-66 257.3 369 44.2
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.9e-65 253.8 272 51.8
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 7.2e-65 251.9 272 51.5
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 7.5e-62 241.9 240 48.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 9.2e-60 235.0 198 60.1
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.7e-59 233.4 238 45.4
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-51 208.0 184 57.1
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 6.2e-48 195.7 114 75.4
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 1.7e-45 187.6 203 46.3
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 8.3e-45 185.3 237 37.1
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.4e-44 184.5 181 54.1
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 3.2e-44 183.3 201 44.3
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 2.0e-38 164.1 225 40.4
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.8e-38 162.5 120 64.2
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 8.9e-31 138.7 133 57.1
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.7e-29 134.4 209 44.0
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 4.0e-23 113.2 125 53.6
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.3e-23 112.8 97 60.8
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.4e-22 110.2 142 46.5
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.9e-21 106.3 152 43.4
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 9.3e-20 102.1 69 68.1
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 3.6e-16 90.1 198 30.8
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 1.1e-12 78.6 71 54.9
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.1e-11 74.3 105 42.9
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.1e-08 64.3 157 26.8
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 2.8e-08 63.9 275 25.8
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.1e-07 62.0 142 28.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 2.4e-07 60.8 142 28.9
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.6e-06 57.4 142 28.9
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 2.6e-06 57.4 206 28.2
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.4e-06 57.0 175 26.3
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 5.8e-06 56.2 145 30.3
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 7.6e-06 55.8 139 30.2
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 1.0e-05 55.5 188 27.1


User provided reference genes

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