Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02307 Striga asiatica HOM05D001317 ORTHO05D399641 3.7e-158 561.6 308 100.0
SGA_v2.0_scaffold15G07423 Striga asiatica HOM05D001317 ORTHO05D400772 1.1e-13 81.6 76 67.1
Nitab4.5_0000963g0040 Nicotiana tabacum HOM05D001317 ORTHO05D001164 5.4e-08 62.8 104 40.4
SalBow3G0840 Salvia bowleyana HOM05D001317 ORTHO05D001164 5.4e-08 62.8 104 41.3
SGA_v2.0_scaffold710G53496 Striga asiatica HOM05D001317 ORTHO05D001164 5.4e-08 62.8 45 75.6
Nitab4.5_0000132g0090 Nicotiana tabacum HOM05D001317 ORTHO05D001164 9.2e-08 62.0 104 40.4
Peaxi162Scf00068g00034 Petunia axillaris HOM05D001317 ORTHO05D001164 1.2e-07 61.6 124 37.9
Migut.J00976 Erythranthe guttata HOM05D001317 ORTHO05D001164 1.6e-07 61.2 45 73.3
Sopen09g003940 Solanum pennellii HOM05D001317 ORTHO05D001164 1.6e-07 61.2 104 41.3
Dinv21243 Davidia involucrata HOM05D001317 ORTHO05D001164 3.5e-07 60.1 104 39.4
Hma1.2p1_0646F.1_g194990 Hydrangea macrophylla HOM05D001317 ORTHO05D001164 3.5e-07 60.1 45 71.1
MSTRG.19237 Avicennia marina HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 68.9
Nitab4.5_0003454g0030 Nicotiana tabacum HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 68.9
Peaxi162Scf00163g00217 Petunia axillaris HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 68.9
Rhsim03G0079200 Rhododendron simsii HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 71.1
Rhsim03G0079800 Rhododendron simsii HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 71.1
Rhsim04G0134900 Rhododendron simsii HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 68.9
RhsimUnG0042300 Rhododendron simsii HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 68.9
THA.LOC104826930 Tarenaya hassleriana HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 66.7
vmacro07381 Vaccinium macrocarpon HOM05D001317 ORTHO05D001164 6.0e-07 59.3 45 71.1
CSS0016769 Camellia sinensis var. sinensis HOM05D001317 ORTHO05D001164 7.8e-07 58.9 104 40.4
PGSC0003DMG400002711 Solanum tuberosum HOM05D001317 ORTHO05D001164 7.8e-07 58.9 45 68.9
vmacro08823 Vaccinium macrocarpon HOM05D001317 ORTHO05D001164 1.0e-06 58.5 45 68.9
BcaB03g11579 Brassica carinata HOM05D001317 ORTHO05D001164 1.3e-06 58.2 45 64.4
BcaC05g26952 Brassica carinata HOM05D001317 ORTHO05D001164 1.3e-06 58.2 45 64.4
CiPaw.10G006400 Carya illinoinensis HOM05D001317 ORTHO05D001164 1.3e-06 58.2 42 73.8
Dinv19840 Davidia involucrata HOM05D001317 ORTHO05D001164 1.3e-06 58.2 45 68.9
Oeu039816.1 Olea europaea HOM05D001317 ORTHO05D001164 1.3e-06 58.2 69 50.7
Potri.006G115400 Populus trichocarpa HOM05D001317 ORTHO05D001164 1.3e-06 58.2 45 66.7
THA.LOC104823227 Tarenaya hassleriana HOM05D001317 ORTHO05D001164 1.3e-06 58.2 45 64.4
TWI53G1386 Tripterygium wilfordii HOM05D001317 ORTHO05D001164 1.3e-06 58.2 45 66.7
Actinidia10396 Actinidia chinensis HOM05D001317 ORTHO05D001164 1.7e-06 57.8 45 66.7
MSTRG.5815 Avicennia marina HOM05D001317 ORTHO05D001164 1.7e-06 57.8 45 66.7
Oeu018723.1 Olea europaea HOM05D001317 ORTHO05D001164 1.7e-06 57.8 104 39.4
PGSC0003DMG400028170 Solanum tuberosum HOM05D001317 ORTHO05D001164 1.7e-06 57.8 104 37.5
Cfa016558 Carpinus fangiana HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 64.4
CiPaw.09G009700 Carya illinoinensis HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 64.4
Haze_19559 Corylus avellana HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 64.4
ECA233G0586 Erigeron canadensis HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 66.7
FvH4_6g18110 Fragaria vesca HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 64.4
FAN09G2556 Fragaria x ananassa HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 64.4
Lsat_1_v5_gn_6_70780 Lactuca sativa HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 66.7
Lj3A1002G51 Lonicera japonica HOM05D001317 ORTHO05D001164 2.3e-06 57.4 42 73.8
Prupe.7G115700 Prunus persica HOM05D001317 ORTHO05D001164 2.3e-06 57.4 45 64.4
SGA_v2.0_scaffold75G24791 Striga asiatica HOM05D001317 ORTHO05D001164 2.3e-06 57.4 44 70.5
Atru.chr8.1614 Acer truncatum HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 64.4
Actinidia05450 Actinidia chinensis HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 66.7
Aa31LG3G2480 Aethionema arabicum HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
AL3G21270 Arabidopsis lyrata HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
AT3G09980 Arabidopsis thaliana HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
BcaC01g04255 Brassica carinata HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
BcaC05g29725 Brassica carinata HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
A03p35740 Brassica napus HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
A05p39040 Brassica napus HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
C03p43410 Brassica napus HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
C05p58060 Brassica napus HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
BolC5t34463H Brassica oleracea HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
BraA03t12748Z Brassica rapa HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
BraA05t22696Z Brassica rapa HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
Carub.0003s0908 Capsella rubella HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
CARHR084490 Cardamine hirsuta HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
Thhalv10021627m.g Eutrema salsugineum HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
MBI01_g05551_MAGBIO Magnolia biondii HOM05D001317 ORTHO05D001164 3.0e-06 57.0 42 71.4
MD12G1020200 Malus domestica HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 64.4
MD14G1017400 Malus domestica HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 64.4
Sp3g08320 Schrenkiella parvula HOM05D001317 ORTHO05D001164 3.0e-06 57.0 45 62.2
C05p28000 Brassica napus HOM05D001317 ORTHO05D001164 3.9e-06 56.6 45 62.2
BolC5t31527H Brassica oleracea HOM05D001317 ORTHO05D001164 3.9e-06 56.6 45 62.2
AUR62009804 Chenopodium quinoa HOM05D001317 ORTHO05D001164 3.9e-06 56.6 42 73.8
AUR62038116 Chenopodium quinoa HOM05D001317 ORTHO05D001164 3.9e-06 56.6 42 73.8
AUR62043077 Chenopodium quinoa HOM05D001317 ORTHO05D001164 3.9e-06 56.6 42 73.8
Ciclev10012928m.g Citrus clementina HOM05D001317 ORTHO05D001164 3.9e-06 56.6 80 45.0
HanXRQChr11g0351201 Helianthus annuus HOM05D001317 ORTHO05D001164 3.9e-06 56.6 104 37.5
Lsat_1_v5_gn_1_48540 Lactuca sativa HOM05D001317 ORTHO05D001164 3.9e-06 56.6 45 64.4
QL07p040067 Quercus lobata HOM05D001317 ORTHO05D001164 3.9e-06 56.6 45 64.4
TWI77G0148 Tripterygium wilfordii HOM05D001317 ORTHO05D001164 3.9e-06 56.6 45 64.4
FAN05G0604 Fragaria x ananassa HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 62.2
FAN05G3700 Fragaria x ananassa HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 62.2
Gohir.D09G137100 Gossypium hirsutum HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 64.4
Oeu052893.1 Olea europaea HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 64.4
Psat3g035200 Pisum sativum HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 64.4
Solyc10g083520.2 Solanum lycopersicum HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 62.2
Sopen10g032990 Solanum pennellii HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 62.2
THA.LOC104823463 Tarenaya hassleriana HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 62.2
TPR.G25372 Trifolium pratense HOM05D001317 ORTHO05D001164 5.1e-06 56.2 45 64.4
GSVIVG01031383001 Vitis vinifera HOM05D001317 ORTHO05D001164 5.1e-06 56.2 47 63.8
ClCG10G019230 Citrullus lanatus HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
MELO3C009443.2 Cucumis melo HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
CsaV3_3G036960 Cucumis sativus L. HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
Dinv42584 Davidia involucrata HOM05D001317 ORTHO05D001164 6.6e-06 55.8 48 64.6
HanXRQChr12g0380951 Helianthus annuus HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 64.4
Lalb_Chr25g0288601 Lupinus albus HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
Manes.08G022200 Manihot esculenta HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
RcHm_v2.0_Chr3g0472381 Rosa chinensis HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
Sabra06G0090300 Salix brachista HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 64.4
Sed0004160 Sechium edule HOM05D001317 ORTHO05D001164 6.6e-06 55.8 45 62.2
unitig_744.g24692 Utricularia gibba HOM05D001317 ORTHO05D001164 6.6e-06 55.8 46 65.2
arahy.Tifrunner.gnm1.ann1.A4KAB7 Arachis hypogaea HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 62.2
arahy.Tifrunner.gnm1.ann1.CC2QWC Arachis hypogaea HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 62.2
BcaB06g28938 Brassica carinata HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 60.0
BcaC08g44609 Brassica carinata HOM05D001317 ORTHO05D001164 8.6e-06 55.5 82 41.5
C06p20800 Brassica napus HOM05D001317 ORTHO05D001164 8.6e-06 55.5 82 41.5
BolC6t37265H Brassica oleracea HOM05D001317 ORTHO05D001164 8.6e-06 55.5 82 41.5
CANSAT80G0207 Cannabis sativa HOM05D001317 ORTHO05D001164 8.6e-06 55.5 77 45.5
Glyma.03G192100 Glycine max HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 62.2
Medtr7g104020 Medicago truncatula HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 64.4
Phvul.001G187400 Phaseolus vulgaris HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 62.2
VMungo1383G3133 Vigna mungo HOM05D001317 ORTHO05D001164 8.6e-06 55.5 45 62.2


User provided reference genes

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