Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.6e-106 388.7 185 100.0
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 8.7e-70 267.3 188 72.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.8e-67 259.6 188 67.6
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 3.2e-64 248.8 188 63.8
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.9e-61 239.6 187 63.6
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.9e-61 239.6 188 62.2
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 3.7e-60 235.3 189 61.4
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 3.7e-60 235.3 189 61.4
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.8e-60 235.0 188 62.8
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.4e-59 233.4 186 62.4
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.8e-59 233.0 188 60.6
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 4.0e-59 231.9 188 60.1
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.0e-59 231.9 186 61.3
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 6.9e-59 231.1 188 60.1
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-58 230.3 188 61.2
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-58 230.3 188 61.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-58 229.6 191 59.7
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.3e-57 226.9 188 60.1
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.7e-57 226.5 188 60.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.7e-57 226.5 188 59.6
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-57 225.7 191 58.6
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 8.4e-57 224.2 189 58.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.1e-56 223.8 188 59.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.1e-56 223.8 188 59.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.4e-56 223.4 188 57.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.9e-56 223.0 192 57.8
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.2e-56 222.2 194 57.2
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 3.2e-56 222.2 194 57.7
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 7.1e-56 221.1 188 57.4
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 7.1e-56 221.1 191 57.6
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 7.1e-56 221.1 190 59.5
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 7.1e-56 221.1 190 58.4
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 9.3e-56 220.7 190 60.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.3e-56 220.7 194 56.7
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-55 219.9 199 56.3
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.6e-55 219.9 184 58.7
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-55 219.9 194 57.2
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.1e-55 219.5 188 58.0
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.7e-55 219.2 188 56.4
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-55 219.2 194 56.7
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 6.0e-55 218.0 188 56.9
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 7.9e-55 217.6 199 56.3
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.8e-54 216.5 188 57.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.8e-54 216.5 188 58.0
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 3.9e-54 215.3 188 56.9
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.9e-54 215.3 188 56.4
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.5e-53 213.4 192 55.2
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.9e-53 213.0 191 54.5
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.9e-53 213.0 188 56.4
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.9e-53 213.0 188 56.9
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 5.7e-53 211.5 188 56.9
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 5.7e-53 211.5 188 54.8
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.3e-52 210.3 184 56.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.6e-52 209.9 188 56.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 3.7e-52 208.8 190 57.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.7e-52 208.8 193 54.9
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 8.2e-52 207.6 175 58.9
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.4e-51 206.8 198 56.1
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 2.4e-51 206.1 220 51.8
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 3.1e-51 205.7 188 55.3
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 5.3e-51 204.9 188 56.4
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 6.9e-51 204.5 188 55.3
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 6.9e-51 204.5 185 55.7
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 9.0e-51 204.1 188 55.3
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.5e-50 203.4 188 54.3
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-50 203.0 190 56.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.0e-50 203.0 190 56.3
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 2.6e-50 202.6 168 61.3
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.4e-50 202.2 188 54.3
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 7.6e-50 201.1 190 55.3
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 7.6e-50 201.1 190 55.3
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 7.6e-50 201.1 188 51.6
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.0e-49 200.7 188 53.2
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.3e-49 200.3 193 51.8
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.3e-49 200.3 188 54.3
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.7e-49 199.9 189 54.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.2e-49 199.5 189 54.5
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.9e-49 199.1 164 59.8
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.8e-49 198.7 190 55.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.1e-48 197.2 188 53.2
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.1e-48 197.2 188 53.2
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.4e-48 196.8 190 53.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.4e-48 196.8 188 51.1
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.4e-48 196.8 204 52.5
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.2e-48 195.7 184 51.6
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 3.2e-48 195.7 188 53.2
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.2e-47 193.7 189 52.9
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-47 193.7 184 52.2
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.6e-47 192.2 190 51.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 3.6e-47 192.2 183 55.2
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 4.6e-47 191.8 187 55.6
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.6e-47 191.8 273 41.8
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.9e-47 191.0 186 51.6
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.8e-46 189.9 185 51.4
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.0e-46 189.1 183 53.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.0e-46 189.1 189 50.8
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 3.9e-46 188.7 189 52.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 8.7e-46 187.6 188 53.7
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.1e-45 187.2 187 53.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.1e-45 187.2 187 53.5
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.1e-45 187.2 187 53.5
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-45 186.0 184 53.8
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.5e-45 186.0 184 53.8
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 2.5e-45 186.0 168 58.3
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.3e-45 185.7 187 50.3
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.3e-45 185.3 191 53.4
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 9.7e-45 184.1 187 53.5
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.8e-44 182.6 183 52.5
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.7e-44 182.2 169 56.2
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.5e-42 175.3 205 45.9
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 3.9e-38 162.2 170 48.8
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.0e-37 159.8 190 45.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.3e-36 157.1 189 45.5
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.8e-35 153.3 132 59.1
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.2e-34 150.6 190 41.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.7e-34 147.9 86 75.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.9e-33 146.0 132 58.3
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 5.0e-33 145.2 93 69.9
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 6.1e-31 138.3 197 40.6
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 3.0e-30 136.0 190 42.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.5e-29 133.7 93 65.6
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.6e-29 132.9 110 58.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-28 130.6 93 64.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 7.0e-27 124.8 200 36.0
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 8.5e-25 117.9 68 76.5
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.2e-24 115.5 79 68.4
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 4.2e-24 115.5 165 38.8
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 7.2e-24 114.8 192 35.9
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.0e-22 110.9 158 39.9
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.3e-22 109.8 66 77.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 4.0e-22 109.0 114 52.6
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-21 106.3 66 71.2
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 3.3e-21 105.9 128 45.3
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 4.4e-21 105.5 64 70.3
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.8e-20 102.8 72 65.3
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 1.2e-18 97.4 189 31.7
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.7e-18 96.3 62 71.0
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 5.0e-17 92.0 189 28.0
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.6e-15 87.0 60 66.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 3.6e-15 85.9 60 61.7
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.0e-14 82.8 49 75.5
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 5.2e-14 82.0 160 36.9
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 6.8e-14 81.6 57 64.9
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.4e-13 79.0 53 66.0
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.3e-12 75.1 161 34.2
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.4e-11 72.0 54 70.4
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.2e-10 70.9 66 48.5
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.2e-10 70.9 70 42.9
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-10 70.9 54 68.5
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 5.9e-10 68.6 70 41.4
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.5e-08 63.2 45 66.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 9.5e-08 61.2 31 83.9
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 2.1e-07 60.1 203 25.6
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.8e-06 54.7 50 62.0


User provided reference genes

Program Settings