Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 5.3e-96 354.4 180 100.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 4.2e-77 291.6 184 85.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.1e-73 279.3 182 80.2
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.4e-72 276.6 182 78.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.4e-72 276.6 180 77.8
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.1e-72 275.0 186 76.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.3e-72 274.6 186 76.9
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.3e-72 274.6 180 76.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 6.9e-72 274.2 178 80.3
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.0e-71 272.7 186 76.9
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.0e-71 272.7 186 76.9
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.6e-71 272.3 186 76.9
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.9e-71 271.2 180 77.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.6e-71 270.8 180 76.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.0e-70 270.4 181 78.5
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.0e-70 270.4 181 78.5
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.8e-70 268.5 174 81.0
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.8e-70 268.5 184 78.3
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 8.5e-70 267.3 183 77.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.5e-70 267.3 172 76.2
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 8.5e-70 267.3 194 73.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.1e-69 266.9 172 76.2
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-69 266.9 172 76.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 3.2e-69 265.4 181 77.3
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 3.2e-69 265.4 180 76.7
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.2e-69 264.2 172 75.6
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 9.3e-69 263.8 186 74.2
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.2e-68 263.5 177 78.5
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.6e-68 261.5 181 76.8
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.6e-68 261.5 181 76.8
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.6e-68 261.5 181 76.8
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.0e-67 260.4 181 76.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.3e-67 259.2 181 74.6
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 3.0e-67 258.8 181 74.0
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.0e-67 258.8 181 76.8
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 3.9e-67 258.5 176 76.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 5.1e-67 258.1 188 74.5
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 5.1e-67 258.1 181 76.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 8.7e-67 257.3 178 73.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 8.7e-67 257.3 178 75.3
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.9e-66 256.1 177 75.1
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.9e-66 256.1 176 76.1
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.3e-66 255.4 176 76.1
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.3e-66 255.4 172 72.1
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.7e-66 254.6 169 78.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 7.4e-66 254.2 174 78.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 9.7e-66 253.8 178 74.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 9.7e-66 253.8 180 76.1
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-65 253.4 178 74.7
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-65 253.4 178 74.7
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.2e-65 252.7 178 73.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.8e-65 252.3 178 74.2
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.8e-65 252.3 178 74.2
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.7e-65 251.9 181 73.5
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.8e-65 251.5 177 74.0
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 6.3e-65 251.1 177 75.7
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 8.2e-65 250.8 181 72.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.2e-65 250.8 176 75.6
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.1e-64 250.4 176 75.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-64 250.0 178 73.6
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 4.1e-64 248.4 180 72.8
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 6.9e-64 247.7 178 74.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 6.9e-64 247.7 181 72.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.1e-64 247.3 181 73.5
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.5e-63 246.5 177 72.3
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.5e-63 246.5 181 71.8
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.0e-63 246.1 174 72.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 172 72.7
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.6e-63 245.7 181 71.3
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 7.7e-63 244.2 172 71.5
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.0e-62 243.8 181 71.3
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.0e-62 243.8 177 71.2
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.3e-62 243.4 178 70.8
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.2e-62 242.7 181 74.6
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.9e-62 242.3 181 71.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 2.9e-62 242.3 178 71.9
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 2.9e-62 242.3 180 69.4
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.8e-62 241.9 180 70.6
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 3.8e-62 241.9 181 70.2
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 5.0e-62 241.5 177 71.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 5.0e-62 241.5 180 71.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.5e-62 241.1 181 70.2
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.1e-61 240.4 181 70.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.5e-61 239.2 181 69.6
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 5.5e-61 238.0 174 68.4
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.2e-61 237.7 180 70.0
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 9.4e-61 237.3 178 68.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.1e-60 236.1 180 69.4
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.7e-60 235.7 167 73.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.6e-60 235.0 178 68.0
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.1e-60 234.6 178 68.5
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.1e-60 234.6 178 68.5
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 6.1e-60 234.6 174 71.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.1e-60 234.6 178 68.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 6.1e-60 234.6 181 71.3
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.4e-59 233.4 181 66.9
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.4e-59 233.4 181 66.9
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.4e-59 233.4 178 66.9
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.3e-59 232.6 175 68.0
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 2.3e-59 232.6 175 72.0
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.0e-59 232.3 180 70.0
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 8.8e-59 230.7 178 65.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.1e-58 230.3 180 69.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.0e-58 229.6 182 67.0
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.0e-58 229.6 173 71.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.3e-58 228.8 181 68.0
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 4.4e-58 228.4 182 67.6
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 7.4e-58 227.6 180 67.8
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.7e-57 226.5 178 66.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.2e-57 226.1 170 67.1
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.1e-56 223.8 179 68.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.4e-56 223.4 181 65.2
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.8e-56 223.0 181 67.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-56 223.0 157 75.2
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.4e-56 222.6 182 66.5
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 5.3e-56 221.5 175 67.4
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.1e-56 220.7 179 68.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.2e-55 220.3 179 67.0
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.7e-54 216.5 141 79.4
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 153 69.3
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.4e-53 213.4 181 63.0
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.5e-53 212.6 172 64.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.5e-53 212.6 178 62.4
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.2e-52 210.3 182 64.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.0e-51 207.2 158 68.4
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 6.7e-51 204.5 188 63.3
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.5e-50 203.4 253 47.4
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 2.0e-50 203.0 141 75.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 2.0e-50 203.0 163 69.3
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.8e-48 196.4 173 62.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 4.5e-47 191.8 177 55.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-45 187.2 123 75.6
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.1e-44 183.0 178 61.8
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.1e-44 183.0 143 58.0
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.7e-44 182.6 181 54.1
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.7e-41 173.3 144 59.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 6.3e-41 171.4 196 53.1
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.4e-40 170.2 196 55.6
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 3.1e-40 169.1 180 51.1
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 2.8e-33 146.0 117 67.5
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.3e-33 144.8 113 66.4
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 3.5e-31 139.0 131 58.8
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.5e-31 139.0 184 47.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.9e-31 138.3 174 46.6
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-30 136.3 88 76.1
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.0e-30 135.2 84 78.6
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.9e-29 133.3 130 57.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.9e-29 133.3 89 74.2
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 8.0e-28 127.9 146 54.1
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.4e-24 116.3 114 58.8
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.0e-23 113.2 91 61.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 5.6e-21 105.1 124 46.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.6e-20 103.6 118 44.1
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.4e-19 100.5 105 41.9
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 3.0e-19 99.4 108 54.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 3.0e-19 99.4 108 54.6
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.2e-18 97.4 90 57.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.7e-14 83.6 166 33.7
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.0e-12 74.7 48 75.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.5e-10 70.5 112 37.5
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.4e-10 69.3 85 50.6
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 5.8e-10 68.6 79 50.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.9e-08 63.5 68 50.0
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.3e-06 56.6 88 43.2
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 3.0e-06 56.2 108 39.8
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.0e-06 55.5 187 33.7


User provided reference genes

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