Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 0.0e+00 1103.6 722 100.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.1e-200 704.1 471 80.0
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.7e-199 699.5 463 77.8
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.1e-188 663.3 483 70.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-173 614.4 501 65.9
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.7e-172 609.0 465 69.7
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 8.1e-172 608.2 465 69.5
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.0e-170 603.6 446 71.3
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 6.4e-169 598.6 481 66.5
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 7.8e-167 591.7 453 69.5
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.7e-166 590.5 474 66.9
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.9e-165 587.0 464 67.0
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 6.2e-164 582.0 438 71.2
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.3e-161 574.3 464 66.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.3e-161 574.3 476 66.4
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.4e-161 571.6 482 64.5
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.9e-160 570.5 466 65.7
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.9e-160 570.5 445 69.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.2e-160 569.7 452 67.7
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.2e-160 569.7 468 66.2
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 7.1e-160 568.5 471 66.5
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 9.3e-160 568.2 468 66.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.6e-159 567.4 409 70.4
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.1e-159 567.0 464 66.8
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.7e-159 566.6 463 66.5
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.7e-159 566.6 466 65.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.5e-159 566.2 466 63.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 4.6e-159 565.8 444 69.4
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.0e-159 565.5 454 67.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 6.0e-159 565.5 463 66.1
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.9e-159 565.1 494 62.8
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 7.9e-159 565.1 458 67.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.8e-158 563.9 466 65.7
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 2.3e-158 563.5 457 66.1
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.0e-158 563.1 455 65.1
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 3.0e-158 563.1 490 63.1
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.9e-158 562.8 466 66.3
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 8.7e-158 561.6 488 65.2
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.3e-157 559.7 468 65.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 7.4e-157 558.5 452 67.3
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.6e-156 557.4 488 65.0
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.8e-156 555.8 452 66.4
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 6.2e-156 555.4 452 66.2
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-155 554.3 470 65.1
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.4e-155 553.5 449 64.8
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.1e-155 553.1 465 65.6
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 4.0e-155 552.7 471 62.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 9.0e-155 551.6 470 62.1
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.2e-154 551.2 437 64.8
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-154 551.2 454 67.0
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 5.8e-154 548.9 475 61.3
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 5.8e-154 548.9 468 64.5
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.0e-153 548.1 452 66.2
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.3e-153 547.7 452 66.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.7e-153 547.4 452 65.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.2e-153 547.0 491 62.7
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 3.8e-153 546.2 408 66.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.9e-153 545.8 452 65.9
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.4e-153 545.0 452 64.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.1e-152 544.7 488 62.1
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.9e-152 543.9 451 65.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.8e-150 537.3 404 68.3
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.0e-150 536.6 486 60.9
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.1e-150 535.8 408 66.2
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 6.7e-150 535.4 468 63.9
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 8.7e-150 535.0 454 64.5
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.9e-149 533.9 452 64.2
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.9e-149 533.9 473 62.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.9e-149 533.9 487 61.4
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 5.7e-149 532.3 517 59.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.3e-148 531.2 478 62.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-147 527.7 465 62.4
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.5e-146 524.2 478 60.7
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.9e-145 520.0 336 77.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.8e-145 519.6 455 60.4
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 6.5e-145 518.8 468 62.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.2e-144 516.2 462 63.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 9.3e-144 515.0 397 65.7
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.6e-143 514.2 450 62.9
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 3.5e-143 513.1 465 60.4
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 6.1e-143 512.3 467 62.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 6.1e-143 512.3 459 59.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 3.9e-142 509.6 468 59.8
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.7e-142 508.8 453 63.1
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.3e-140 504.6 408 63.7
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.6e-140 504.2 437 60.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.2e-140 503.8 458 60.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.1e-139 500.0 462 60.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 3.1e-139 500.0 376 66.5
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.1e-139 499.6 460 60.9
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.2e-138 498.0 400 64.0
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.0e-137 495.0 484 58.3
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.1e-136 491.5 460 59.8
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.6e-135 486.1 469 59.5
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.1e-133 481.5 414 59.9
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.5e-133 481.1 390 62.1
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 7.4e-133 478.8 397 64.7
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.3e-132 478.0 456 59.0
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.7e-132 477.6 388 61.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.8e-132 476.9 484 55.2
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.9e-129 466.8 372 69.1
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 5.5e-128 462.6 417 57.8
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.2e-127 461.5 468 53.8
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.7e-127 460.3 484 55.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 3.9e-126 456.4 395 60.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.1e-125 454.9 345 67.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.1e-123 448.4 398 59.0
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.1e-119 432.6 463 55.3
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.4e-118 431.4 478 52.1
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 6.7e-118 429.1 363 61.2
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.6e-111 407.9 391 56.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 9.8e-109 398.7 360 65.0
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.0e-105 388.7 326 62.0
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 8.3e-100 369.0 490 46.3
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.8e-99 367.9 347 56.2
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 4.5e-98 363.2 285 66.3
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.0e-94 352.1 368 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.7e-92 343.6 422 46.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 8.3e-92 342.4 365 51.5
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 5.4e-83 313.2 301 62.8
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.1e-80 305.4 218 69.7
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.4e-77 293.5 445 44.7
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.4e-75 287.7 366 48.9
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 8.1e-71 272.7 462 41.1
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.1e-70 272.3 239 65.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 6.0e-66 256.5 380 41.6
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.5e-64 251.1 189 67.2
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.4e-61 240.7 528 34.3
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.9e-59 235.0 345 42.3
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-53 214.9 163 65.0
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.9e-40 171.8 120 66.7
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.5e-40 171.4 137 57.7
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 2.9e-36 157.9 173 56.1
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 7.1e-35 153.3 200 44.5
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 7.6e-29 133.3 122 61.5
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 2.1e-26 125.2 94 63.8
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 7.4e-24 116.7 106 56.6
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 2.2e-23 115.2 106 55.7
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-22 112.8 118 68.6
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 9.0e-22 109.8 283 32.5
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 2.0e-21 108.6 88 62.5
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.5e-16 92.4 109 62.4
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 6.9e-14 83.6 106 46.2
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 9.1e-14 83.2 358 25.1
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.2e-11 74.7 162 33.3
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.5e-11 73.9 70 52.9
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.1e-09 67.4 106 43.4
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 4.4e-08 64.3 78 46.2
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 3.7e-07 61.2 58 58.6
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 8.2e-07 60.1 44 65.9
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 8.2e-07 60.1 126 33.3


User provided reference genes

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