Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 7.1e-156 553.9 281 100.0
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.2e-101 372.9 241 78.8
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.2e-101 372.9 280 70.0
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.1e-100 370.5 283 69.3
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.9e-100 369.8 255 76.1
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 6.1e-99 364.8 219 83.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 6.1e-99 364.8 283 68.9
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.0e-98 364.0 220 83.2
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 6.7e-98 361.3 219 83.1
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 8.8e-98 360.9 219 82.6
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 5.7e-97 358.2 283 68.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 9.7e-97 357.5 215 83.7
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.7e-96 356.7 219 82.2
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.2e-96 356.3 217 83.4
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.1e-95 354.0 216 83.3
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.1e-95 354.0 216 84.3
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.4e-95 353.6 239 74.1
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 3.1e-95 352.4 283 66.1
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.1e-95 352.1 217 79.3
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 5.3e-95 351.7 217 80.6
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 6.9e-95 351.3 220 80.0
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 9.1e-95 350.9 219 80.8
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.5e-94 350.1 223 78.5
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.5e-94 350.1 212 83.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 2.0e-94 349.7 222 80.2
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.0e-94 349.7 215 82.3
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 3.4e-94 349.0 216 82.4
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 4.5e-94 348.6 216 81.0
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 4.5e-94 348.6 243 73.7
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 7.7e-94 347.8 219 79.9
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.3e-93 347.1 244 73.0
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.3e-93 347.1 216 79.6
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.7e-93 346.7 222 77.5
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.2e-93 346.3 217 78.3
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 2.9e-93 345.9 280 66.1
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 3.8e-93 345.5 217 78.8
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.8e-93 345.5 225 77.3
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 3.8e-93 345.5 217 78.3
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.8e-93 345.5 289 65.1
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 5.0e-93 345.1 221 78.3
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 6.5e-93 344.7 283 66.4
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 8.5e-93 344.4 222 76.6
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.1e-92 344.0 217 77.9
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.4e-92 343.6 285 64.2
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.2e-92 342.0 221 77.8
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 5.5e-92 341.7 253 71.1
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 5.5e-92 341.7 219 79.9
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 7.2e-92 341.3 206 82.5
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 7.2e-92 341.3 217 77.4
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.2e-91 340.5 217 78.3
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 2.1e-91 339.7 216 81.0
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 1.0e-90 337.4 218 78.4
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.8e-90 336.7 217 79.7
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 8.8e-90 334.3 218 79.8
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.1e-89 334.0 218 78.0
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.5e-89 333.6 219 78.1
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.5e-89 333.6 241 71.4
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 2.6e-89 332.8 219 78.1
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.4e-89 332.0 217 79.7
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 7.4e-89 331.3 221 77.4
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 9.7e-89 330.9 213 78.9
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 9.7e-89 330.9 213 78.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-88 330.5 217 76.5
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-88 330.5 221 76.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.3e-88 330.5 217 76.5
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.7e-88 330.1 211 77.7
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.8e-88 329.3 220 75.5
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 4.8e-88 328.6 216 77.3
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 4.8e-88 328.6 214 75.7
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 6.3e-88 328.2 221 75.6
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 8.2e-88 327.8 215 75.3
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.4e-87 327.0 276 65.2
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-87 327.0 219 75.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.4e-87 327.0 216 77.3
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.4e-87 327.0 207 78.3
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.4e-87 327.0 205 80.0
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.4e-87 326.2 213 77.5
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 3.1e-87 325.9 213 77.5
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 3.1e-87 325.9 205 80.0
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 7.0e-87 324.7 202 80.2
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 9.1e-87 324.3 214 76.6
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.2e-86 323.9 213 77.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.6e-86 323.6 213 77.5
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 1.6e-86 323.6 207 81.2
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.0e-86 323.2 202 80.2
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.0e-86 323.2 287 61.0
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.6e-86 322.8 214 76.6
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 3.5e-86 322.4 216 75.9
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 4.5e-86 322.0 213 77.5
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 4.5e-86 322.0 214 77.6
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.7e-85 320.1 210 76.2
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 2.2e-85 319.7 208 77.9
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 2.9e-85 319.3 214 72.9
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 8.5e-85 317.8 217 72.4
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.1e-84 317.4 213 75.6
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.9e-84 316.6 214 72.4
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.5e-84 316.2 217 71.9
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 1.2e-83 313.9 210 77.1
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 2.1e-83 313.2 206 76.2
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.1e-83 313.2 220 70.9
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.0e-82 310.8 189 81.0
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 2.6e-81 306.2 178 83.7
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 3.3e-81 305.8 214 73.4
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.3e-80 303.9 213 73.2
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 4.1e-79 298.9 194 77.8
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 7.0e-79 298.1 213 71.4
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 4.7e-75 285.4 204 73.5
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.3e-72 277.3 187 71.1
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 6.3e-72 275.0 200 67.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 9.5e-68 261.2 211 64.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.5e-60 237.3 179 62.0
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 6.1e-59 231.9 181 61.3
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.1e-52 211.1 132 80.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.2e-46 191.0 149 65.8
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.5e-46 189.5 114 81.6
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.9e-45 186.0 190 49.5
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 9.9e-41 171.4 182 50.0
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 3.8e-24 116.3 186 36.0
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 7.3e-20 102.1 77 64.9
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.8e-19 99.4 75 73.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.4e-16 88.6 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 2.5e-12 77.0 61 65.6
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 5.3e-10 69.3 52 65.4
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 1.9e-07 60.8 217 26.3
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 7.1e-07 58.9 234 25.2
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 2.1e-06 57.4 203 26.6
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.7e-06 57.0 213 25.4
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 2.7e-06 57.0 200 25.0
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 4.6e-06 56.2 208 25.5


User provided reference genes

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