Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01973 Striga asiatica HOM05D008392 ORTHO05D010441 5.7e-167 590.9 309 100.0
SalBow7G4279 Salvia bowleyana HOM05D008392 ORTHO05D010441 5.4e-56 222.2 298 45.3
CAN.G1076.23 Capsicum annuum HOM05D008392 ORTHO05D010441 2.0e-42 177.2 274 38.3
Peaxi162Scf01061g00127 Petunia axillaris HOM05D008392 ORTHO05D010441 2.0e-42 177.2 289 39.1
Dinv24467 Davidia involucrata HOM05D008392 ORTHO05D010441 2.6e-42 176.8 302 39.7
Actinidia35516 Actinidia chinensis HOM05D008392 ORTHO05D010441 1.3e-41 174.5 279 42.3
Solyc01g100620.3 Solanum lycopersicum HOM05D008392 ORTHO05D010441 3.7e-41 172.9 267 39.7
Sopen01g044120 Solanum pennellii HOM05D008392 ORTHO05D010441 6.4e-41 172.2 277 38.3
Migut.B00948 Erythranthe guttata HOM05D008392 ORTHO05D010441 7.0e-40 168.7 200 50.0
Oeu053741.2 Olea europaea HOM05D008392 ORTHO05D010441 1.3e-38 164.5 359 35.4
Cc02_g35180 Coffea canephora HOM05D008392 ORTHO05D010441 3.1e-35 153.3 244 37.7
Lsat_1_v5_gn_5_40160 Lactuca sativa HOM05D008392 ORTHO05D010441 2.4e-32 143.7 242 38.4
DCAR_005422 Daucus carota HOM05D008392 ORTHO05D010441 3.2e-32 143.3 290 35.9
DCAR_025288 Daucus carota HOM05D008392 ORTHO05D010441 3.9e-30 136.3 264 34.5
vmacro01573 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.1e-29 134.8 284 39.4
CANSAT54G2036 Cannabis sativa HOM05D008392 ORTHO05D010441 4.0e-27 126.3 276 34.1
Rhsim11G0096300 Rhododendron simsii HOM05D008392 ORTHO05D010441 5.2e-27 125.9 266 38.0
Prupe.6G312100 Prunus persica HOM05D008392 ORTHO05D010441 6.8e-27 125.6 263 35.7
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.2e-26 124.8 230 37.4
Nn5g30235 Nelumbo nucifera HOM05D001261 ORTHO05D010441 1.2e-26 124.8 303 33.0
Nitab4.5_0004525g0010 Nicotiana tabacum HOM05D008392 ORTHO05D010441 5.8e-26 122.5 270 33.0
Nitab4.5_0001338g0070 Nicotiana tabacum HOM05D008392 ORTHO05D010441 2.9e-25 120.2 291 33.0
Aqoxy2G02705 Aquilegia oxysepala HOM05D001261 ORTHO05D010441 1.2e-23 114.8 282 31.2
TAR362G1147 Trochodendron aralioides HOM05D001261 ORTHO05D010441 3.5e-23 113.2 354 29.7
MD04G1192900 Malus domestica HOM05D008392 ORTHO05D010441 1.0e-22 111.7 238 34.5
Lj5g0025247 Lotus japonicus HOM05D008392 ORTHO05D010441 3.0e-22 110.2 243 35.4
Lalb_Chr19g0129211 Lupinus albus HOM05D008392 ORTHO05D010441 1.5e-21 107.8 284 31.7
MD12G1204900 Malus domestica HOM05D008392 ORTHO05D010441 1.5e-21 107.8 276 32.2
QL03p014198 Quercus lobata HOM05D008392 ORTHO05D010441 5.6e-21 105.9 275 32.4
Psat6g152920 Pisum sativum HOM05D008392 ORTHO05D010441 7.3e-21 105.5 285 34.0
Ca_10178_v3 Cicer arietinum L. HOM05D008392 ORTHO05D010441 1.2e-20 104.8 234 32.1
MD12G1205000 Malus domestica HOM05D008392 ORTHO05D010441 1.6e-20 104.4 245 35.5
Glyma.20G096200 Glycine max HOM05D008392 ORTHO05D010441 3.6e-20 103.2 252 32.9
arahy.Tifrunner.gnm1.ann1.S3TC9P Arachis hypogaea HOM05D008392 ORTHO05D010441 4.7e-20 102.8 224 32.6
arahy.Tifrunner.gnm1.ann1.DRX87E Arachis hypogaea HOM05D008392 ORTHO05D010441 1.1e-19 101.7 222 32.4
VMungo0720G2188 Vigna mungo HOM05D008392 ORTHO05D010441 3.1e-19 100.1 261 30.7
Medtr5g080030 Medicago truncatula HOM05D008392 ORTHO05D010441 3.4e-18 96.7 256 31.2
Psat6g152960 Pisum sativum HOM05D008392 ORTHO05D010441 5.8e-18 95.9 263 32.7
Phvul.007G202100 Phaseolus vulgaris HOM05D008392 ORTHO05D010441 1.7e-17 94.4 273 28.9
RcHm_v2.0_Chr3g0457251 Rosa chinensis HOM05D008392 ORTHO05D010441 6.4e-17 92.4 343 27.7
Lj1g0008102 Lotus japonicus HOM05D008392 ORTHO05D010441 2.1e-15 87.4 238 29.8
CDE08G0491 Ceratophyllum demersum HOM05D008392 ORTHO05D010441 6.0e-15 85.9 261 28.0
Medtr5g095070 Medicago truncatula HOM05D008392 ORTHO05D010441 2.3e-14 84.0 227 29.5
Lalb_Chr06g0167451 Lupinus albus HOM05D008392 ORTHO05D010441 1.1e-13 81.6 246 30.5
FAN14G5205 Fragaria x ananassa HOM05D001457 ORTHO05D010441 2.1e-12 77.4 112 40.2
Migut.B00949 Erythranthe guttata HOM05D008392 ORTHO05D010441 3.6e-12 76.6 74 54.1
MBI19_g03251_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 8.1e-12 75.5 205 31.2
ATR0693G224 Amborella trichopoda HOM05D001261 ORTHO05D001130 1.8e-11 74.3 298 25.2
FAN05G3611 Fragaria x ananassa HOM05D008392 ORTHO05D010441 1.8e-11 74.3 327 25.7
FvH4_6g07580 Fragaria vesca HOM05D008392 ORTHO05D010441 2.4e-11 73.9 339 25.1
FAN02G4301 Fragaria x ananassa HOM05D001457 ORTHO05D010441 2.4e-11 73.9 340 25.0
AUR62036749 Chenopodium quinoa HOM05D001261 ORTHO05D001130 5.2e-11 72.8 237 27.0
AUR62013853 Chenopodium quinoa HOM05D001261 ORTHO05D001130 1.5e-10 71.2 238 26.1
Glyma.10G146432 Glycine max HOM05D008392 ORTHO05D010441 1.5e-10 71.2 83 42.2
Lsat_1_v5_gn_9_46720 Lactuca sativa HOM05D001261 ORTHO05D001130 2.0e-10 70.9 227 29.5
Actinidia15468 Actinidia chinensis HOM05D001261 ORTHO05D001130 4.4e-10 69.7 224 30.8
SMO367G0741 Selaginella moellendorffii HOM05D001261 ORTHO05D001130 7.6e-10 68.9 252 24.6
unitig_21.g20260 Utricularia gibba HOM05D001261 ORTHO05D001130 9.9e-10 68.6 260 25.4
Psat0s3339g0160 Pisum sativum HOM05D008392 ORTHO05D010441 3.8e-09 66.6 106 37.7
Prupe.6G035300 Prunus persica HOM05D001261 ORTHO05D001130 4.9e-09 66.2 242 26.9
Pp3c7_23660 Physcomitrium patens HOM05D001261 ORTHO05D001130 6.4e-09 65.9 107 40.2
Mapoly0043s0128 Marchantia polymorpha HOM05D001261 ORTHO05D001130 1.1e-08 65.1 115 37.4
Cc05_g15700 Coffea canephora HOM05D001261 ORTHO05D001130 4.2e-08 63.2 250 26.0
ECA232G0527 Erigeron canadensis HOM05D001261 ORTHO05D001130 4.2e-08 63.2 239 28.0
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 4.2e-08 63.2 44 72.7
Lsat_1_v5_gn_2_44980 Lactuca sativa HOM05D001261 ORTHO05D001130 5.4e-08 62.8 298 25.2
THA.LOC104822702 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 5.4e-08 62.8 263 27.8
GSVIVG01008723001 Vitis vinifera HOM05D001261 ORTHO05D001130 5.4e-08 62.8 247 27.1
Lj1g0016144 Lotus japonicus HOM05D001261 ORTHO05D001130 1.2e-07 61.6 264 26.9
FAN25G3495 Fragaria x ananassa HOM05D001261 ORTHO05D001130 2.1e-07 60.8 268 25.0
Nn1g07633 Nelumbo nucifera HOM05D001261 ORTHO05D001130 2.1e-07 60.8 270 26.3
PSO782G5301 Papaver somniferum HOM05D001261 ORTHO05D001130 2.7e-07 60.5 275 25.1
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 3.5e-07 60.1 79 36.7
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 3.5e-07 60.1 79 36.7
CSS0050103 Camellia sinensis var. sinensis HOM05D001261 ORTHO05D001130 3.5e-07 60.1 280 26.8
FAN21G2040 Fragaria x ananassa HOM05D001261 ORTHO05D001130 3.5e-07 60.1 268 25.0
MD11G1045900 Malus domestica HOM05D001261 ORTHO05D001130 4.6e-07 59.7 268 23.1
PSO063G5485 Papaver somniferum HOM05D001261 ORTHO05D001130 4.6e-07 59.7 298 24.5
SGA_v2.0_scaffold14G07025 Striga asiatica HOM05D017480 ORTHO05D026194 4.6e-07 59.7 33 84.8
SGA_v2.0_scaffold484G52360 Striga asiatica HOM05D017480 ORTHO05D026194 4.6e-07 59.7 33 84.8
Actinidia03674 Actinidia chinensis HOM05D001261 ORTHO05D001130 6.0e-07 59.3 245 27.3
Potri.011G168800 Populus trichocarpa HOM05D001261 ORTHO05D001130 6.0e-07 59.3 279 24.7
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 6.0e-07 59.3 77 40.3
Zm00001eb240740 Zea mays HOM05D001261 ORTHO05D001130 6.0e-07 59.3 296 28.7
AagrBONN_evm.TU.Sc2ySwM_344.3465 Anthoceros agrestis HOM05D001261 ORTHO05D001130 7.8e-07 58.9 312 24.4
MSTRG.14524 Avicennia marina HOM05D001261 ORTHO05D001130 7.8e-07 58.9 247 25.1
Cfa016960 Carpinus fangiana HOM05D001261 ORTHO05D001130 7.8e-07 58.9 272 25.4
CiPaw.12G142500 Carya illinoinensis HOM05D001261 ORTHO05D001130 7.8e-07 58.9 242 26.0
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 7.8e-07 58.9 77 36.4
FAN16G2494 Fragaria x ananassa HOM05D001261 ORTHO05D001130 7.8e-07 58.9 268 25.0
MD03G1042900 Malus domestica HOM05D001261 ORTHO05D001130 7.8e-07 58.9 268 22.8
SEGI_21670 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 7.8e-07 58.9 260 27.3
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 1.0e-06 58.5 79 36.7
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 1.0e-06 58.5 117 32.5
Rhsim04G0007700 Rhododendron simsii HOM05D001261 ORTHO05D001130 1.0e-06 58.5 269 26.0
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 1.0e-06 58.5 77 36.4
unitig_744.g24498 Utricularia gibba HOM05D001261 ORTHO05D001130 1.0e-06 58.5 226 27.0
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 1.3e-06 58.2 77 36.4
EL10Ac3g07478 Beta vulgaris HOM05D001261 ORTHO05D001130 1.3e-06 58.2 300 26.7
Ca_15451_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 1.3e-06 58.2 280 26.1
FvH4_3g41610 Fragaria vesca HOM05D001261 ORTHO05D001130 1.3e-06 58.2 269 24.9
FAN11G1862 Fragaria x ananassa HOM05D001261 ORTHO05D001130 1.3e-06 58.2 269 24.9
ATR0751G203 Amborella trichopoda HOM05D001261 ORTHO05D001130 1.7e-06 57.8 284 25.0
Carub.0001s0412 Capsella rubella HOM05D001261 ORTHO05D001130 1.7e-06 57.8 93 39.8
Gorai.009G190400 Gossypium raimondii HOM05D001261 ORTHO05D001130 1.7e-06 57.8 255 27.1
Nn5g30869 Nelumbo nucifera HOM05D001261 ORTHO05D001130 1.7e-06 57.8 269 26.8
Atru.chr4.1702 Acer truncatum HOM05D001261 ORTHO05D001130 2.3e-06 57.4 281 25.6
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 2.3e-06 57.4 75 36.0
CAN.G8.47 Capsicum annuum HOM05D001261 ORTHO05D001130 2.3e-06 57.4 277 26.4
Ciclev10008919m.g Citrus clementina HOM05D001261 ORTHO05D001130 2.3e-06 57.4 277 24.9
COL.COLO4_09888 Corchorus olitorius HOM05D001261 ORTHO05D001130 2.3e-06 57.4 122 33.6
Migut.C00909 Erythranthe guttata HOM05D001261 ORTHO05D001130 2.3e-06 57.4 233 27.5
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.3e-06 57.4 77 37.7
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.3e-06 57.4 77 37.7
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 2.3e-06 57.4 99 32.3
GSVIVG01014843001 Vitis vinifera HOM05D001261 ORTHO05D001130 2.3e-06 57.4 274 25.2
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 3.0e-06 57.0 79 35.4
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-06 57.0 77 37.7
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-06 57.0 77 37.7
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-06 57.0 79 35.4
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 3.0e-06 57.0 77 37.7
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 3.0e-06 57.0 79 35.4
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 3.0e-06 57.0 77 37.7
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.0e-06 57.0 77 36.4
SEGI_22736 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 3.0e-06 57.0 305 24.6
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 3.9e-06 56.6 77 36.4
Duzib212G0740 Durio zibethinus HOM05D001261 ORTHO05D001130 3.9e-06 56.6 104 36.5
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 3.9e-06 56.6 76 36.8
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 5.1e-06 56.2 77 33.8
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 5.1e-06 56.2 75 37.3
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 5.1e-06 56.2 77 36.4
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 5.1e-06 56.2 77 36.4
Manes.05G204800 Manihot esculenta HOM05D001261 ORTHO05D001130 5.1e-06 56.2 264 26.5
Pp3c1_33100 Physcomitrium patens HOM05D001261 ORTHO05D001130 5.1e-06 56.2 95 35.8
Solyc09g091960.3 Solanum lycopersicum HOM05D001261 ORTHO05D001130 5.1e-06 56.2 92 41.3
Sopen09g034860 Solanum pennellii HOM05D001261 ORTHO05D001130 5.1e-06 56.2 92 41.3
Cc03_g07860 Coffea canephora HOM05D001261 ORTHO05D001130 6.6e-06 55.8 102 37.3
Migut.H01714 Erythranthe guttata HOM05D001261 ORTHO05D001130 6.6e-06 55.8 252 25.8
Gohir.A05G182100 Gossypium hirsutum HOM05D001261 ORTHO05D001130 6.6e-06 55.8 255 25.9
Phvul.009G020700 Phaseolus vulgaris HOM05D001261 ORTHO05D001130 6.6e-06 55.8 268 28.0
RcHm_v2.0_Chr5g0074651 Rosa chinensis HOM05D001261 ORTHO05D001130 6.6e-06 55.8 270 23.3
Sc07g0009970 Simmondsia chinensis HOM05D004154 ORTHO05D004988 6.6e-06 55.8 84 33.3
SGA_v2.0_scaffold351G49665 Striga asiatica HOM05D017480 ORTHO05D026194 6.6e-06 55.8 33 78.8
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 6.6e-06 55.8 80 35.0
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 8.7e-06 55.5 77 36.4
Medtr3g114920 Medicago truncatula HOM05D001261 ORTHO05D001130 8.7e-06 55.5 272 25.7
Potri.001G315200 Populus trichocarpa HOM05D001261 ORTHO05D001130 8.7e-06 55.5 172 27.9
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 8.7e-06 55.5 77 33.8
Thecc.04G203600 Theobroma cacao HOM05D001261 ORTHO05D001130 8.7e-06 55.5 104 36.5


User provided reference genes

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