Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 3.9e-148 528.5 343 100.0
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 8.7e-116 421.0 386 78.0
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 2.2e-111 406.4 225 90.2
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 9.3e-110 401.0 385 75.6
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.2e-109 400.6 386 75.4
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 2.3e-108 396.4 379 76.5
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 3.0e-108 396.0 385 74.5
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 3.9e-108 395.6 376 76.3
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 6.7e-108 394.8 399 72.4
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.9e-107 393.3 384 71.9
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.9e-107 393.3 376 75.8
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 4.3e-107 392.1 396 63.6
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 7.4e-107 391.3 384 72.9
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 9.7e-107 391.0 382 74.3
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.6e-106 390.2 378 75.1
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.2e-106 389.8 386 72.3
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 3.7e-106 389.0 379 75.2
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.1e-105 387.5 383 74.7
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.4e-105 387.1 384 71.4
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 4.1e-105 385.6 403 69.7
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 5.3e-105 385.2 223 83.4
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 5.3e-105 385.2 383 73.6
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 1.2e-104 384.0 223 85.2
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.2e-104 384.0 387 72.9
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.0e-104 383.3 375 74.9
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.6e-104 382.9 380 72.6
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.6e-104 382.9 377 71.1
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.0e-103 380.9 383 72.1
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.3e-103 380.6 419 67.1
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.2e-103 379.8 381 72.7
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 2.2e-103 379.8 381 72.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 3.8e-103 379.0 389 73.3
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 5.0e-103 378.6 222 84.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 8.5e-103 377.9 223 82.1
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.1e-102 377.5 223 81.6
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.1e-102 377.5 393 70.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 1.4e-102 377.1 409 68.2
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.4e-102 377.1 382 73.0
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.4e-102 377.1 384 72.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 1.9e-102 376.7 223 80.7
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.9e-102 376.7 382 72.3
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 2.5e-102 376.3 377 72.7
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 3.2e-102 375.9 223 80.7
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 4.2e-102 375.6 223 80.3
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 4.2e-102 375.6 391 71.4
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 4.2e-102 375.6 381 74.0
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.2e-102 374.8 390 72.6
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.2e-102 374.8 390 72.6
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.6e-101 373.6 376 74.5
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.1e-101 373.2 384 72.4
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.7e-101 372.9 363 73.6
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 4.6e-101 372.1 390 71.8
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 6.1e-101 371.7 221 83.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 6.1e-101 371.7 370 74.6
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 7.9e-101 371.3 403 68.0
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.4e-100 370.5 387 70.0
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.3e-100 369.8 383 71.5
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 5.1e-100 368.6 392 70.4
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 5.1e-100 368.6 377 72.4
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 8.8e-100 367.9 390 70.0
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 8.8e-100 367.9 381 71.4
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 8.8e-100 367.9 370 73.8
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.1e-99 367.5 222 80.6
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.1e-99 367.5 222 81.5
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.5e-99 367.1 379 70.7
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.5e-99 366.3 402 68.7
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.3e-99 365.5 382 71.7
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.3e-98 364.0 382 72.0
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.8e-97 360.1 352 75.6
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.1e-97 359.4 190 88.4
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.1e-97 359.4 435 64.8
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 5.3e-97 358.6 381 70.3
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 6.9e-97 358.2 354 74.9
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 6.9e-97 358.2 354 74.9
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 3.4e-96 355.9 356 74.2
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.4e-96 355.9 395 54.2
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 3.4e-96 355.9 391 68.5
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 5.9e-96 355.1 372 68.5
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.0e-95 354.4 188 89.4
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.2e-95 353.2 190 85.8
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 2.9e-95 352.8 437 65.2
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.1e-94 350.9 190 85.3
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.9e-94 350.1 190 85.3
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 3.2e-94 349.4 375 71.2
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 4.2e-94 349.0 215 81.4
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 4.2e-94 349.0 215 81.4
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 9.4e-94 347.8 190 84.7
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 9.4e-94 347.8 190 84.7
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 1.2e-93 347.4 354 74.3
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 2.7e-93 346.3 190 83.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 2.7e-93 346.3 384 68.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 4.7e-93 345.5 190 84.2
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.4e-92 344.0 190 84.2
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 3.0e-92 342.8 190 84.2
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.0e-92 342.8 386 69.2
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 6.7e-92 341.7 223 75.3
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.7e-90 337.0 386 68.1
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 3.7e-90 335.9 343 70.8
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.1e-89 334.3 190 82.6
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 3.5e-88 329.3 191 80.6
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.9e-88 328.6 214 75.2
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 7.7e-88 328.2 353 69.1
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-87 327.8 343 72.9
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 2.2e-87 326.6 190 81.6
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 6.5e-87 325.1 373 68.4
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 9.4e-86 321.2 218 71.6
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.2e-85 320.9 167 89.2
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.7e-85 319.7 343 72.0
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 2.7e-85 319.7 211 73.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.8e-84 317.0 353 54.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 3.9e-84 315.8 487 55.9
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.7e-82 310.5 190 76.3
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.2e-82 310.1 358 49.7
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 4.8e-82 308.9 397 63.2
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 7.7e-80 301.6 389 62.5
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 6.5e-79 298.5 529 51.2
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 9.1e-73 278.1 339 50.4
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 7.2e-70 268.5 190 62.1
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.6e-59 233.4 311 66.9
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 4.5e-56 222.6 185 54.6
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 7.3e-54 215.3 184 55.4
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 6.4e-50 202.2 192 53.6
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 7.3e-46 188.7 97 89.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 4.7e-45 186.0 127 73.2
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.7e-42 177.6 276 59.4
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.5e-40 169.9 94 81.9
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 4.7e-29 132.9 126 62.7
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.8e-26 123.2 90 67.8
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.6e-24 116.3 70 77.1
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.6e-24 116.3 70 77.1
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 3.9e-15 86.7 51 80.4
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 2.5e-14 84.0 54 79.6
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 3.6e-13 80.1 53 60.4
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 8.1e-13 79.0 69 60.9
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.1e-09 68.6 42 78.6
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 1.8e-07 61.2 56 64.3
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 3.9e-07 60.1 43 79.1
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 6.7e-07 59.3 192 49.5
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 2.5e-06 57.4 27 96.3


User provided reference genes

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