Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 0.0e+00 1134.8 571 100.0
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 2.0e-165 586.6 609 53.7
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.4e-163 579.7 610 53.1
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 8.7e-161 571.2 601 52.2
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 4.8e-151 538.9 614 49.3
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 6.2e-151 538.5 472 64.0
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 9.0e-150 534.6 663 46.3
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.7e-148 530.4 625 48.8
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 3.2e-147 526.2 622 47.1
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 3.2e-147 526.2 620 48.2
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 9.3e-147 524.6 622 47.6
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 9.3e-147 524.6 622 47.6
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 9.3e-147 524.6 622 47.7
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.9e-144 516.9 622 46.8
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.1e-143 513.5 614 47.9
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 5.3e-142 508.8 623 46.2
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 6.9e-142 508.4 625 46.2
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.0e-140 504.6 619 47.2
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.7e-140 503.8 561 50.8
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 6.5e-140 501.9 617 47.2
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.6e-138 497.3 617 45.9
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.7e-138 496.5 631 46.6
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 2.7e-138 496.5 619 47.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 3.5e-138 496.1 625 45.9
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 6.1e-138 495.4 590 47.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 7.9e-138 495.0 623 46.4
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 5.1e-137 492.3 623 45.7
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 6.7e-137 491.9 628 45.7
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.7e-137 491.5 611 45.8
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.1e-136 491.1 608 45.9
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 1.5e-136 490.7 615 46.5
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.9e-136 490.3 621 46.7
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 3.3e-136 489.6 619 45.4
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 4.3e-136 489.2 618 45.3
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 5.7e-136 488.8 621 46.1
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.6e-135 487.3 614 46.6
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.6e-135 487.3 624 44.9
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.8e-135 486.5 616 46.9
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.1e-134 484.6 618 45.8
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 3.1e-134 483.0 618 45.8
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 3.1e-134 483.0 616 46.3
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.0e-134 481.5 619 45.9
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.6e-133 479.9 615 46.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 4.5e-133 479.2 619 45.2
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 7.7e-133 478.4 619 45.2
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 7.7e-133 478.4 613 45.0
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 7.7e-133 478.4 613 45.0
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.7e-132 477.2 639 43.5
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.9e-132 476.5 622 44.9
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 3.8e-132 476.1 602 45.0
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.8e-132 476.1 619 45.2
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 5.0e-132 475.7 626 45.4
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.1e-131 474.6 625 46.1
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.1e-131 474.6 630 44.0
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 7.2e-131 471.9 617 44.7
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.1e-130 470.3 617 44.4
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 6.1e-130 468.8 625 44.8
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.4e-129 467.6 625 45.1
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.4e-129 467.6 624 44.4
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 3.0e-129 466.5 609 44.3
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 3.9e-129 466.1 625 44.2
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 5.1e-129 465.7 618 44.5
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 2.5e-128 463.4 611 43.7
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 3.3e-128 463.0 624 44.1
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 4.3e-128 462.6 619 44.7
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.3e-127 461.1 624 44.6
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.3e-127 461.1 619 44.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 2.2e-127 460.3 591 45.2
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 3.7e-127 459.5 657 42.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.3e-127 458.8 621 44.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 6.9e-126 455.3 615 45.0
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 9.1e-126 454.9 621 43.3
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 7.7e-125 451.8 609 45.3
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.0e-124 451.4 609 45.3
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.3e-124 451.1 623 43.5
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 3.8e-124 449.5 609 45.2
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.2e-123 446.0 601 44.4
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.7e-122 443.4 611 45.0
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.7e-122 443.4 613 45.0
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.7e-122 443.4 613 45.0
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.7e-122 442.6 622 43.2
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.0e-121 441.4 637 42.4
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 3.0e-121 439.9 613 42.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 5.7e-120 435.6 596 44.3
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 5.7e-120 435.6 589 43.3
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.3e-119 434.5 619 41.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 6.3e-119 432.2 595 44.5
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 6.3e-119 432.2 625 41.6
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.4e-118 431.0 576 44.6
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.1e-118 429.5 619 42.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 5.3e-118 429.1 584 42.8
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 8.5e-116 421.8 631 41.8
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.2e-114 417.9 589 42.6
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.0e-113 414.8 593 42.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 5.5e-107 392.5 661 38.7
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.2e-106 391.3 625 38.6
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 8.8e-105 385.2 612 39.2
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 5.7e-104 382.5 652 38.5
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 7.0e-102 375.6 621 38.8
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 4.2e-99 366.3 503 43.3
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.4e-97 361.3 473 43.8
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.5e-88 331.3 329 52.9
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-87 328.2 336 53.6
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.6e-84 315.8 334 50.6
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 8.3e-71 272.3 629 32.1
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 3.5e-69 266.9 480 35.6
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.7e-61 240.7 347 38.9
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.1e-59 235.3 583 31.4
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.4e-56 223.4 473 34.2
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.2e-53 215.3 613 29.5
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 9.6e-43 179.1 166 56.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 3.1e-41 174.1 215 47.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.2e-39 167.9 219 43.4
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 6.7e-36 156.4 314 29.6
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 5.3e-33 146.7 197 43.7
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.5e-30 137.9 270 37.4
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 3.7e-26 124.0 156 39.7
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 7.9e-21 106.3 273 29.3
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 2.2e-18 98.2 127 43.3
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 3.4e-16 90.9 206 29.6
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.2e-15 88.2 57 73.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.8e-15 87.4 101 51.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.0e-15 87.0 88 55.7
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.9e-14 85.1 93 46.2
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.2e-14 83.2 76 59.2
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 9.7e-11 72.8 82 47.6
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-09 69.3 88 44.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.4e-08 64.3 68 50.0
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.2e-07 61.6 69 46.4
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.9e-07 61.2 84 41.7
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 8.5e-07 59.7 91 33.0


User provided reference genes

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