Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 0.0e+00 1128.2 612 100.0
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.8e-170 602.4 648 57.1
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.2e-112 411.4 680 43.1
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.8e-111 407.5 660 44.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-110 404.4 660 44.2
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.3e-101 374.8 607 43.2
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 9.5e-97 358.6 377 55.7
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.7e-85 320.1 384 52.1
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 6.4e-85 319.3 387 50.1
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 1.9e-84 317.8 646 38.9
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 1.2e-83 315.1 363 52.3
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 7.8e-83 312.4 382 51.0
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.7e-82 311.2 366 51.1
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 6.6e-82 309.3 732 35.5
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 6.6e-82 309.3 732 35.5
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 6.6e-82 309.3 384 50.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 8.6e-82 308.9 386 50.8
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 2.5e-81 307.4 388 50.0
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 7.3e-81 305.8 392 46.4
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 2.1e-80 304.3 630 38.4
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 8.1e-80 302.4 646 38.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.1e-79 302.0 411 47.0
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 2.6e-78 297.4 364 49.7
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.4e-78 297.0 370 50.5
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 7.5e-78 295.8 565 39.3
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 1.3e-77 295.0 354 50.0
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 2.9e-77 293.9 383 50.9
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 6.4e-77 292.7 318 53.5
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 8.3e-77 292.4 382 49.2
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.1e-76 292.0 314 53.5
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 3.2e-76 290.4 607 37.7
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 3.2e-76 290.4 346 50.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.5e-75 287.0 617 38.6
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.7e-74 284.6 376 49.2
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 3.0e-74 283.9 388 48.2
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 3.0e-74 283.9 368 48.4
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 3.0e-74 283.9 433 44.8
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 3.9e-74 283.5 423 45.4
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 5.1e-74 283.1 407 45.9
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.6e-74 282.7 347 51.0
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.1e-73 282.0 353 50.4
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.9e-73 281.2 399 45.4
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.5e-73 280.8 401 46.1
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 4.3e-73 280.0 642 36.0
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 5.6e-73 279.6 405 47.2
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 9.5e-73 278.9 407 45.7
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.2e-72 278.5 357 48.7
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.2e-72 278.5 426 42.3
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.8e-72 277.3 371 45.3
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 3.6e-72 276.9 356 48.3
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 4.7e-72 276.6 360 47.2
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 4.7e-72 276.6 383 48.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 6.2e-72 276.2 204 69.6
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 1.4e-71 275.0 510 41.6
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.8e-71 274.6 356 49.2
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.8e-71 274.6 365 47.4
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.8e-71 274.6 407 44.0
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.4e-71 274.2 419 44.4
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.1e-71 273.9 398 45.7
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 4.0e-71 273.5 371 49.1
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.2e-70 271.9 392 46.2
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 4.4e-70 270.0 436 44.0
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.4e-70 270.0 309 51.1
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 5.8e-70 269.6 384 46.6
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.2e-69 267.7 622 36.8
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.9e-69 267.3 403 45.2
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 4.9e-69 266.5 321 49.5
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 8.4e-69 265.8 353 49.6
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.4e-68 265.0 403 44.9
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.4e-68 265.0 423 43.7
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.4e-68 264.2 223 61.9
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.2e-68 263.8 390 44.9
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 3.2e-68 263.8 226 61.9
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.1e-68 263.5 183 72.1
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 4.1e-68 263.5 474 39.7
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 5.4e-68 263.1 226 62.4
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 5.4e-68 263.1 295 53.2
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 4.6e-67 260.0 344 48.5
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 6.0e-67 259.6 385 45.2
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 7.8e-67 259.2 389 46.0
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.0e-66 258.8 385 45.2
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.0e-66 258.8 393 44.8
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 3.0e-66 257.3 189 67.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 3.9e-66 256.9 393 44.5
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 5.1e-66 256.5 359 46.2
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.5e-65 255.0 180 69.4
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 1.5e-65 255.0 180 69.4
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.5e-65 255.0 180 69.4
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.5e-65 254.2 442 43.0
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 7.3e-65 252.7 432 40.7
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.2e-64 251.9 385 42.9
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.6e-64 251.5 340 45.6
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.1e-64 251.1 627 34.3
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 8.1e-64 249.2 296 50.0
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.1e-63 248.8 377 45.1
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.1e-63 248.8 266 53.0
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.4e-63 248.4 317 48.9
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 2.4e-63 247.7 319 49.8
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 3.1e-63 247.3 396 44.2
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 5.2e-63 246.5 377 42.7
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.5e-62 245.0 365 45.8
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.5e-62 245.0 353 45.6
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.5e-62 245.0 538 37.2
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 7.6e-62 242.7 228 59.2
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 9.9e-62 242.3 360 44.7
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.2e-61 241.1 216 61.1
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.8e-61 240.4 240 57.1
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.1e-60 238.8 239 54.4
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.4e-60 238.4 378 41.3
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.9e-60 238.0 385 43.6
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.7e-59 234.2 393 42.0
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 6.0e-59 233.0 337 46.3
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 3.3e-57 227.3 347 46.1
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.3e-56 225.3 398 42.2
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 2.8e-56 224.2 182 63.7
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 8.1e-56 222.6 178 65.2
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.1e-55 222.2 201 59.2
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.1e-55 220.7 194 60.8
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 6.9e-55 219.5 374 41.4
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.5e-54 218.4 412 43.0
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.0e-54 218.0 582 33.3
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.9e-52 211.5 221 52.0
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.9e-52 211.5 311 45.7
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 7.1e-52 209.5 369 40.1
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 4.6e-51 206.8 352 40.3
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.6e-49 199.9 228 48.2
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.1e-47 195.7 209 54.1
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.8e-47 194.9 229 49.8
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 5.3e-47 193.4 288 43.8
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.3e-45 188.7 288 43.4
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 6.7e-42 176.4 200 49.5
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 5.6e-41 173.3 379 36.9
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.5e-38 165.2 201 48.3
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 4.2e-36 157.1 313 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 2.1e-35 154.8 217 44.2
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.8e-34 151.8 139 53.2
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 2.3e-34 151.4 180 46.7
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.0e-34 151.0 257 39.7
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 6.7e-34 149.8 218 44.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.7e-32 144.1 293 39.9
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 6.5e-29 133.3 96 64.6
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 5.5e-28 130.2 96 63.5
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 1.1e-23 115.9 96 65.6
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 3.1e-15 87.8 71 56.3
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 7.0e-15 86.7 83 54.2
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 3.2e-12 77.8 229 30.6
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 4.2e-12 77.4 171 39.2
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.7e-11 74.7 108 35.2
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.7e-08 65.5 100 39.0
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 5.9e-06 57.0 102 35.3


User provided reference genes

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