Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18198 Striga asiatica HOM05D001231 ORTHO05D001012 2.0e-40 169.1 114 100.0
SalBow1G2431 Salvia bowleyana HOM05D001231 ORTHO05D001012 6.9e-17 90.9 63 60.3
Migut.H01662 Erythranthe guttata HOM05D001231 ORTHO05D001012 3.4e-16 88.6 59 61.0
Migut.M01514 Erythranthe guttata HOM05D001231 ORTHO05D001012 2.4e-14 82.4 57 61.4
SalBow1G3487 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.6e-13 79.7 60 55.0
SalBow8G3771 Salvia bowleyana HOM05D001231 ORTHO05D001012 6.0e-13 77.8 56 60.7
SalBow7G0339 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.3e-12 75.9 56 57.1
SalBow8G2299 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.3e-12 75.9 54 57.4
SalBow8G3014 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.3e-12 75.9 54 57.4
Oeu002794.1 Olea europaea HOM05D003280 ORTHO05D013339 9.6e-11 70.5 59 50.8
Migut.H01661 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.3e-10 70.1 51 54.9
SGA_v2.0_scaffold7G03620 Striga asiatica HOM05D000870 ORTHO05D000715 1.4e-09 66.6 58 50.0
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 2.4e-09 65.9 49 59.2
SalBow8G2012 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.1e-09 65.5 55 50.9
SalBow8G5419 Salvia bowleyana HOM05D001231 ORTHO05D001012 3.1e-09 65.5 55 50.9
HanXRQChr08g0224941 Helianthus annuus HOM05D001231 ORTHO05D001012 4.0e-09 65.1 49 57.1
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 1.2e-08 63.5 48 58.3
Actinidia36588 Actinidia chinensis HOM05D001231 ORTHO05D001012 2.0e-08 62.8 60 48.3
MSTRG.13083 Avicennia marina HOM05D001231 ORTHO05D001012 2.0e-08 62.8 56 44.6
SalBow8G0100 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.0e-08 62.8 46 58.7
SalBow8G5093 Salvia bowleyana HOM05D001231 ORTHO05D001012 2.0e-08 62.8 46 58.7
Thecc.04G141100 Theobroma cacao HOM05D001231 ORTHO05D001012 3.4e-08 62.0 58 44.8
Lalb_Chr05g0229081 Lupinus albus HOM05D001231 ORTHO05D001012 4.5e-08 61.6 49 55.1
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 4.5e-08 61.6 49 57.1
GSVIVG01000230001 Vitis vinifera HOM05D001231 ORTHO05D001012 5.8e-08 61.2 58 46.6
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 7.6e-08 60.8 48 58.3
Prupe.7G071400 Prunus persica HOM05D001231 ORTHO05D001012 7.6e-08 60.8 60 50.0
Sp2g13530 Schrenkiella parvula HOM05D001231 ORTHO05D001012 7.6e-08 60.8 49 53.1
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 7.6e-08 60.8 52 51.9
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 1.3e-07 60.1 52 53.8
HanXRQChr17g0533321 Helianthus annuus HOM05D001231 ORTHO05D001012 1.3e-07 60.1 57 47.4
Solyc07g007710.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 1.3e-07 60.1 49 53.1
Sopen07g003700 Solanum pennellii HOM05D001231 ORTHO05D001012 1.3e-07 60.1 49 53.1
DCAR_023524 Daucus carota HOM05D001231 ORTHO05D001012 1.7e-07 59.7 53 45.3
Lalb_Chr12g0206521 Lupinus albus HOM05D001231 ORTHO05D001012 1.7e-07 59.7 60 43.3
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 1.7e-07 59.7 54 48.1
Thecc.04G140800 Theobroma cacao HOM05D001231 ORTHO05D001012 1.7e-07 59.7 58 43.1
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 2.2e-07 59.3 58 44.8
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 2.2e-07 59.3 48 56.2
Medtr8g095375 Medicago truncatula HOM05D001231 ORTHO05D001012 2.2e-07 59.3 58 44.8
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.2e-07 59.3 54 46.3
Sp2g13540 Schrenkiella parvula HOM05D001231 ORTHO05D001012 2.2e-07 59.3 49 49.0
PGSC0003DMG400030676 Solanum tuberosum HOM05D001231 ORTHO05D001012 2.2e-07 59.3 49 51.0
arahy.Tifrunner.gnm1.ann1.UPL4LC Arachis hypogaea HOM05D001231 ORTHO05D001012 2.9e-07 58.9 54 44.4
Duzib268G0639 Durio zibethinus HOM05D001231 ORTHO05D001012 2.9e-07 58.9 53 49.1
Thhalv10005228m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 2.9e-07 58.9 49 51.0
Prupe.7G073300 Prunus persica HOM05D001231 ORTHO05D001012 2.9e-07 58.9 60 48.3
C02p50240 Brassica napus HOM05D001231 ORTHO05D001012 3.8e-07 58.5 49 51.0
BolC2t11102H Brassica oleracea HOM05D001231 ORTHO05D001012 3.8e-07 58.5 49 51.0
Duzib268G0537 Durio zibethinus HOM05D001231 ORTHO05D001012 3.8e-07 58.5 58 46.6
Hma1.2p1_0383F.1_g140500 Hydrangea macrophylla HOM05D001231 ORTHO05D001012 3.8e-07 58.5 58 48.3
Lsat_1_v5_gn_3_7561 Lactuca sativa HOM05D000756 ORTHO05D000604 3.8e-07 58.5 55 45.5
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.8e-07 58.5 53 45.3
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 3.8e-07 58.5 53 45.3
FvH4_4g36104 Fragaria vesca HOM05D001231 ORTHO05D001012 4.9e-07 58.2 52 50.0
Hma1.2p1_0383F.1_g140490 Hydrangea macrophylla HOM05D001231 ORTHO05D001012 4.9e-07 58.2 58 48.3
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.9e-07 58.2 58 46.6
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 4.9e-07 58.2 50 50.0
BcaB07g30354 Brassica carinata HOM05D001231 ORTHO05D001012 6.4e-07 57.8 49 49.0
Glyma.16G100400 Glycine max HOM05D001231 ORTHO05D001012 6.4e-07 57.8 52 50.0
Sp2g13520 Schrenkiella parvula HOM05D001231 ORTHO05D001012 6.4e-07 57.8 49 49.0
PGSC0003DMG400015129 Solanum tuberosum HOM05D001231 ORTHO05D001012 6.4e-07 57.8 49 51.0
PGSC0003DMG400030677 Solanum tuberosum HOM05D001231 ORTHO05D001012 6.4e-07 57.8 60 38.3
arahy.Tifrunner.gnm1.ann1.4H5G59 Arachis hypogaea HOM05D001231 ORTHO05D001012 8.4e-07 57.4 54 44.4
BcaC03g17116 Brassica carinata HOM05D001231 ORTHO05D001012 8.4e-07 57.4 49 51.0
CARHR144750 Cardamine hirsuta HOM05D001231 ORTHO05D001012 8.4e-07 57.4 49 49.0
MELO3C005214.2 Cucumis melo HOM05D001231 ORTHO05D001012 8.4e-07 57.4 52 50.0
Eucgr.B02620 Eucalyptus grandis HOM05D001231 ORTHO05D001012 8.4e-07 57.4 58 48.3
Glyma.06G160400 Glycine max HOM05D001231 ORTHO05D001012 8.4e-07 57.4 54 44.4
Glyma.08G268000 Glycine max HOM05D001231 ORTHO05D001012 8.4e-07 57.4 50 52.0
Medtr3g097420 Medicago truncatula HOM05D001231 ORTHO05D001012 8.4e-07 57.4 54 46.3
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 8.4e-07 57.4 52 50.0
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 8.4e-07 57.4 58 46.6
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 8.4e-07 57.4 58 43.1
THA.LOC109116172 Tarenaya hassleriana HOM05D001231 ORTHO05D001012 8.4e-07 57.4 49 49.0
BcaC06g34079 Brassica carinata HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
A02p32650 Brassica napus HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
A06p43800 Brassica napus HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
C07p32970 Brassica napus HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
BolC7t43808H Brassica oleracea HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
BraA02t08280Z Brassica rapa HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
BraA06t27257Z Brassica rapa HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 49.0
Duzib248G0383 Durio zibethinus HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 46.9
Gohir.A05G375500 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.1e-06 57.0 45 53.3
Gohir.D04G040300 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.1e-06 57.0 45 53.3
Gorai.012G045400 Gossypium raimondii HOM05D001231 ORTHO05D001012 1.1e-06 57.0 45 53.3
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 1.1e-06 57.0 54 50.0
Lalb_Chr12g0206371 Lupinus albus HOM05D001231 ORTHO05D001012 1.1e-06 57.0 48 52.1
MD12G1061700 Malus domestica HOM05D001231 ORTHO05D001012 1.1e-06 57.0 57 45.6
MD14G1061400 Malus domestica HOM05D001231 ORTHO05D001012 1.1e-06 57.0 46 52.2
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 1.1e-06 57.0 52 48.1
Manes.18G077618 Manihot esculenta HOM05D001231 ORTHO05D001012 1.1e-06 57.0 53 49.1
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 51.0
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 1.1e-06 57.0 49 51.0
Prupe.7G071000 Prunus persica HOM05D001231 ORTHO05D001012 1.1e-06 57.0 60 46.7
Prupe.7G071100 Prunus persica HOM05D001231 ORTHO05D001012 1.1e-06 57.0 60 46.7
Prupe.7G071200 Prunus persica HOM05D001231 ORTHO05D001012 1.1e-06 57.0 60 46.7
Prupe.7G071300 Prunus persica HOM05D001231 ORTHO05D001012 1.1e-06 57.0 60 46.7
TPR.G29340 Trifolium pratense HOM05D001231 ORTHO05D001012 1.1e-06 57.0 54 44.4
Aa31LG2G7830 Aethionema arabicum HOM05D001231 ORTHO05D001012 1.4e-06 56.6 49 49.0
arahy.Tifrunner.gnm1.ann1.IDU4K1 Arachis hypogaea HOM05D001231 ORTHO05D001012 1.4e-06 56.6 54 46.3
Cpa.g.sc2.96 Carica papaya HOM05D001231 ORTHO05D001012 1.4e-06 56.6 50 50.0
Lj1g0008875 Lotus japonicus HOM05D001231 ORTHO05D001012 1.4e-06 56.6 58 43.1
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 1.4e-06 56.6 53 45.3
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 1.4e-06 56.6 53 49.1
PSO541G0662 Papaver somniferum HOM05D001231 ORTHO05D001012 1.4e-06 56.6 49 51.0
PGR044G1171 Punica granatum HOM05D001231 ORTHO05D001012 1.4e-06 56.6 49 49.0
Atru.chr11.1065 Acer truncatum HOM05D001231 ORTHO05D001012 1.9e-06 56.2 52 48.1
COL.COLO4_16210 Corchorus olitorius HOM05D001231 ORTHO05D001012 1.9e-06 56.2 58 39.7
Duzib213G0741 Durio zibethinus HOM05D001231 ORTHO05D001012 1.9e-06 56.2 49 49.0
Migut.F00873 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.9e-06 56.2 55 40.0
MD12G1061400 Malus domestica HOM05D001231 ORTHO05D001012 1.9e-06 56.2 45 53.3
MD14G1061900 Malus domestica HOM05D001231 ORTHO05D001012 1.9e-06 56.2 45 55.6
MD16G1009100 Malus domestica HOM05D001231 ORTHO05D001012 1.9e-06 56.2 49 49.0
Prupe.1G341500 Prunus persica HOM05D001231 ORTHO05D001012 1.9e-06 56.2 52 48.1
Solyc07g007750.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 1.9e-06 56.2 49 49.0
Sopen07g001030 Solanum pennellii HOM05D001231 ORTHO05D001012 1.9e-06 56.2 49 49.0
Carub.0005s0116 Capsella rubella HOM05D001231 ORTHO05D001012 2.4e-06 55.8 49 46.9
ECA233G2112 Erigeron canadensis HOM05D000188 ORTHO05D000362 2.4e-06 55.8 48 52.1
MD16G1009000 Malus domestica HOM05D001231 ORTHO05D001012 2.4e-06 55.8 52 46.2
Medtr3g097370 Medicago truncatula HOM05D001231 ORTHO05D001012 2.4e-06 55.8 52 48.1
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 2.4e-06 55.8 54 46.3
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.4e-06 55.8 54 46.3
QL10p038692 Quercus lobata HOM05D001231 ORTHO05D001012 2.4e-06 55.8 58 41.4
CARHR144770 Cardamine hirsuta HOM05D001231 ORTHO05D001012 3.2e-06 55.5 45 51.1
FvH4_4g36102 Fragaria vesca HOM05D001231 ORTHO05D001012 3.2e-06 55.5 52 46.2
FAN07G0709 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.2e-06 55.5 52 46.2
FAN12G0873 Fragaria x ananassa HOM05D001184 ORTHO05D003397 3.2e-06 55.5 51 49.0
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 3.2e-06 55.5 52 46.2
Hund09741 Selenicereus undatus HOM05D001231 ORTHO05D001012 3.2e-06 55.5 49 49.0
A06p43790 Brassica napus HOM05D001231 ORTHO05D001012 4.2e-06 55.1 47 44.7
C07p32980 Brassica napus HOM05D001231 ORTHO05D001012 4.2e-06 55.1 47 44.7
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 4.2e-06 55.1 58 41.4
Ciclev10026887m.g Citrus clementina HOM05D001231 ORTHO05D001012 4.2e-06 55.1 60 40.0
ECA233G3610 Erigeron canadensis HOM05D001231 ORTHO05D001012 4.2e-06 55.1 60 40.0
FAN22G0227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 4.2e-06 55.1 52 46.2
HanXRQChr12g0365811 Helianthus annuus HOM05D001231 ORTHO05D001012 4.2e-06 55.1 45 55.6
Phvul.003G282500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.2e-06 55.1 52 48.1
Atru.chr11.1068 Acer truncatum HOM05D001231 ORTHO05D001012 5.5e-06 54.7 52 46.2
arahy.Tifrunner.gnm1.ann1.IS2QLD Arachis hypogaea HOM05D001231 ORTHO05D001012 5.5e-06 54.7 52 48.1
BcaC06g31249 Brassica carinata HOM05D001231 ORTHO05D001012 5.5e-06 54.7 49 46.9
CARHR144740 Cardamine hirsuta HOM05D001231 ORTHO05D001012 5.5e-06 54.7 49 46.9
CARHR144800 Cardamine hirsuta HOM05D001231 ORTHO05D001012 5.5e-06 54.7 47 44.7
Cc06_g07890 Coffea canephora HOM05D001231 ORTHO05D001012 5.5e-06 54.7 48 45.8
Dinv00224 Davidia involucrata HOM05D001231 ORTHO05D001012 5.5e-06 54.7 52 46.2
Dinv20716 Davidia involucrata HOM05D001231 ORTHO05D001012 5.5e-06 54.7 49 49.0
Lalb_Chr12g0206491 Lupinus albus HOM05D001231 ORTHO05D001012 5.5e-06 54.7 54 46.3
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 5.5e-06 54.7 49 46.9
MD02G1301100 Malus domestica HOM05D001231 ORTHO05D001012 5.5e-06 54.7 52 44.2
Nitab4.5_0007878g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 5.5e-06 54.7 49 46.9
Potri.T011300 Populus trichocarpa HOM05D001231 ORTHO05D001012 5.5e-06 54.7 58 41.4
Potri.T011301 Populus trichocarpa HOM05D001231 ORTHO05D001012 5.5e-06 54.7 58 41.4
Prupe.7G070800 Prunus persica HOM05D001231 ORTHO05D001012 5.5e-06 54.7 60 43.3
Prupe.7G070900 Prunus persica HOM05D001231 ORTHO05D001012 5.5e-06 54.7 60 43.3
QL03p041430 Quercus lobata HOM05D001231 ORTHO05D001012 5.5e-06 54.7 52 46.2
RcHm_v2.0_Chr4g0445761 Rosa chinensis HOM05D001231 ORTHO05D001012 5.5e-06 54.7 52 46.2
Sed0009045 Sechium edule HOM05D001231 ORTHO05D001012 5.5e-06 54.7 54 48.1
Hund09739 Selenicereus undatus HOM05D001231 ORTHO05D001012 5.5e-06 54.7 49 51.0
AL5G11380 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 46.9
AT2G02130 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 46.9
arahy.Tifrunner.gnm1.ann1.X2H08Z Arachis hypogaea HOM05D001231 ORTHO05D001012 7.1e-06 54.3 54 38.9
EL10Ac5g10882 Beta vulgaris HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 46.9
Carub.0005s0115 Capsella rubella HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 44.9
DCAR_026846 Daucus carota HOM05D001231 ORTHO05D001012 7.1e-06 54.3 47 48.9
Migut.M01515 Erythranthe guttata HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 49.0
Lj1g0011574 Lotus japonicus HOM05D001231 ORTHO05D001012 7.1e-06 54.3 56 39.3
Lj4g0025743 Lotus japonicus HOM05D001231 ORTHO05D001012 7.1e-06 54.3 52 48.1
Solyc07g007755.1 Solanum lycopersicum HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 51.0
Sopen07g001020 Solanum pennellii HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 53.1
Sopen07g001050 Solanum pennellii HOM05D001231 ORTHO05D001012 7.1e-06 54.3 49 46.9
CAN.G1126.33 Capsicum annuum HOM05D001231 ORTHO05D001012 9.3e-06 53.9 50 50.0
CAN.G976.2 Capsicum annuum HOM05D001231 ORTHO05D001012 9.3e-06 53.9 49 46.9
COL.COLO4_16172 Corchorus olitorius HOM05D001231 ORTHO05D001012 9.3e-06 53.9 58 41.4
HanXRQChr12g0365821 Helianthus annuus HOM05D001231 ORTHO05D001012 9.3e-06 53.9 49 46.9
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 9.3e-06 53.9 37 64.9
Psat4g112000 Pisum sativum HOM05D001231 ORTHO05D001012 9.3e-06 53.9 52 46.2
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 9.3e-06 53.9 56 42.9
TPR.G19837 Trifolium pratense HOM05D001231 ORTHO05D001012 9.3e-06 53.9 50 48.0
GSVIVG01010274001 Vitis vinifera HOM05D001231 ORTHO05D001012 9.3e-06 53.9 52 44.2


User provided reference genes

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