Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18143 Striga asiatica HOM05D001080 ORTHO05D399389 7.9e-77 290.4 153 100.0
Cc04_g00290 Coffea canephora HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
Oeu009880.1 Olea europaea HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
Oeu040342.1 Olea europaea HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
Sc09g0010190 Simmondsia chinensis HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
SGA_v2.0_scaffold112G31620 Striga asiatica HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
SGA_v2.0_scaffold112G31621 Striga asiatica HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
SGA_v2.0_scaffold122G33287 Striga asiatica HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
unitig_22.g5162 Utricularia gibba HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
unitig_8.g4050 Utricularia gibba HOM05D001080 ORTHO05D001081 6.6e-07 58.2 34 79.4
unitig_27.g24757 Utricularia gibba HOM05D001080 ORTHO05D001081 8.6e-07 57.8 34 79.4
MSTRG.19362 Avicennia marina HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
MSTRG.5935 Avicennia marina HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
Ciclev10009162m.g Citrus clementina HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
Cc04_g14840 Coffea canephora HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
FAN09G0298 Fragaria x ananassa HOM05D001080 ORTHO05D001081 1.5e-06 57.0 35 71.4
Glyma.15G167400 Glycine max HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
Lj6g0003937 Lotus japonicus HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
Lalb_Chr23g0276741 Lupinus albus HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
SalBow6G0323 Salvia bowleyana HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
Sc23g0005110 Simmondsia chinensis HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
TWI34G0557 Tripterygium wilfordii HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
TWI63G1254 Tripterygium wilfordii HOM05D001080 ORTHO05D001081 1.5e-06 57.0 34 76.5
CiPaw.07G099400 Carya illinoinensis HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
CiPaw.07G198500 Carya illinoinensis HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
CiPaw.07G198600 Carya illinoinensis HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
CiPaw.08G031800 Carya illinoinensis HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
CiPaw.13G115100 Carya illinoinensis HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
Migut.L01874 Erythranthe guttata HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
Lsat_1_v5_gn_7_95121 Lactuca sativa HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
Lalb_Chr08g0231981 Lupinus albus HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 73.5
Phvul.009G234700 Phaseolus vulgaris HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
Sc06g0001170 Simmondsia chinensis HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
TPR.G20151 Trifolium pratense HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 79.4
VMungo1309G1840 Vigna mungo HOM05D001080 ORTHO05D001081 1.9e-06 56.6 34 76.5
Actinidia31133 Actinidia chinensis HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
Aqoxy7G02887 Aquilegia oxysepala HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
MSTRG.10433 Avicennia marina HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
Ca_02122_v3 Cicer arietinum L. HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
Ca_02125_v3 Cicer arietinum L. HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
FvH4_6g37170 Fragaria vesca HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FvH4_6g37320 Fragaria vesca HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FAN02G2817 Fragaria x ananassa HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FAN02G3397 Fragaria x ananassa HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FAN05G2868 Fragaria x ananassa HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FAN05G4700 Fragaria x ananassa HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FAN09G2161 Fragaria x ananassa HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
FAN14G5624 Fragaria x ananassa HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
Medtr1g022385 Medicago truncatula HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
Medtr2g038250 Medicago truncatula HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
Oeu029601.1 Olea europaea HOM05D001080 ORTHO05D001081 2.5e-06 56.2 33 78.8
Psat1g143040 Pisum sativum HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
RcHm_v2.0_Chr2g0149791 Rosa chinensis HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
RcHm_v2.0_Chr2g0150141 Rosa chinensis HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 73.5
THA.LOC104810330 Tarenaya hassleriana HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
THA.LOC104815663 Tarenaya hassleriana HOM05D001080 ORTHO05D001081 2.5e-06 56.2 34 76.5
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 3.3e-06 55.8 38 65.8
CDE06G2635 Ceratophyllum demersum HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Haze_06560 Corylus avellana HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Dinv25460 Davidia involucrata HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Dinv37790 Davidia involucrata HOM05D001080 ORTHO05D003286 3.3e-06 55.8 34 73.5
ECA234G0736 Erigeron canadensis HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
ECA236G0228 Erigeron canadensis HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
ECA240G3644 Erigeron canadensis HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
Eucgr.J03165 Eucalyptus grandis HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Eucgr.L00752 Eucalyptus grandis HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Glyma.09G061000 Glycine max HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
HanXRQChr03g0076001 Helianthus annuus HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
HanXRQChr10g0305931 Helianthus annuus HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
HanXRQChr12g0373701 Helianthus annuus HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
Lsat_1_v5_gn_5_124481 Lactuca sativa HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
Lsat_1_v5_gn_9_105821 Lactuca sativa HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
Lalb_Chr04g0264651 Lupinus albus HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Lalb_Chr25g0278661 Lupinus albus HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Manes.05G204100 Manihot esculenta HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Manes.08G117400 Manihot esculenta HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Manes.09G170100 Manihot esculenta HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
MCO09G436 Micromonas commoda HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 76.5
Nn4g25826 Nelumbo nucifera HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
THA.LOC104816740 Tarenaya hassleriana HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
TAR626G0751 Trochodendron aralioides HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
TAR626G1171 Trochodendron aralioides HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
vmacro18756 Vaccinium macrocarpon HOM05D001080 ORTHO05D001081 3.3e-06 55.8 34 73.5
Actinidia21874 Actinidia chinensis HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 70.6
CAN.G947.24 Capsicum annuum HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 70.6
Cpa.g.sc72.55 Carica papaya HOM05D001080 ORTHO05D005850 4.3e-06 55.5 34 76.5
Cfa000365 Carpinus fangiana HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 73.5
Cfa013465 Carpinus fangiana HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 73.5
Lalb_Chr11g0074691 Lupinus albus HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 73.5
Potri.006G073200 Populus trichocarpa HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 76.5
Sabra06G0054600 Salix brachista HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 76.5
TPR.G28918 Trifolium pratense HOM05D001080 ORTHO05D001081 4.3e-06 55.5 34 76.5
arahy.Tifrunner.gnm1.ann1.U0W81Q Arachis hypogaea HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
AUR62009067 Chenopodium quinoa HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
AUR62020601 Chenopodium quinoa HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
Duzib150G0220 Durio zibethinus HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 70.6
Lj5C24T19 Lonicera japonica HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
MBI14_g10724_MAGBIO Magnolia biondii HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 70.6
Nitab4.5_0000028g0390 Nicotiana tabacum HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
Phvul.008G255000 Phaseolus vulgaris HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
PGSC0003DMG400020813 Solanum tuberosum HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 73.5
TAR633G0259 Trochodendron aralioides HOM05D001080 ORTHO05D001081 5.6e-06 55.1 34 70.6
AL4G43000 Arabidopsis lyrata HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
AL788U10010 Arabidopsis lyrata HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
AT2G44120 Arabidopsis thaliana HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
CSS0000813 Camellia sinensis var. sinensis HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
CSS0014992 Camellia sinensis var. sinensis HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
CSS0030109 Camellia sinensis var. sinensis HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
CSS0048930 Camellia sinensis var. sinensis HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Carub.0004s2667 Capsella rubella HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
CiPaw.16G067800 Carya illinoinensis HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Ca_20496_v3 Cicer arietinum L. HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
ClCG07G014580 Citrullus lanatus HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
MELO3C022664.2 Cucumis melo HOM05D001080 ORTHO05D001081 7.3e-06 54.7 37 64.9
CsaV3_3G030670 Cucumis sativus L. HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
Hma1.2p1_1111F.1_g258330 Hydrangea macrophylla HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
MBI19_g19944_MAGBIO Magnolia biondii HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
MD16G1246400 Malus domestica HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Nitab4.5_0002925g0010 Nicotiana tabacum HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Peaxi162Scf00046g00418 Petunia axillaris HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
Prupe.1G073100 Prunus persica HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Prupe.3G019000 Prunus persica HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
PGR102G0763 Punica granatum HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
PGR102G1384 Punica granatum HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
SalBow5G1350 Salvia bowleyana HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
SalBow5G3427 Salvia bowleyana HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
SalBow8G2273 Salvia bowleyana HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Hund03289 Selenicereus undatus HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Solyc07g008370.4 Solanum lycopersicum HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Sopen07g004260 Solanum pennellii HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
PGSC0003DMG402019891 Solanum tuberosum HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
THA.LOC104799380 Tarenaya hassleriana HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 70.6
TAR633G0526 Trochodendron aralioides HOM05D001080 ORTHO05D001081 7.3e-06 54.7 34 73.5
Actinidia24689 Actinidia chinensis HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 70.6
Actinidia38798 Actinidia chinensis HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 70.6
AT2G01250 Arabidopsis thaliana HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 73.5
EL10Ac2g02450 Beta vulgaris HOM05D001080 ORTHO05D001081 9.6e-06 54.3 37 67.6
EL10Ac5g10926 Beta vulgaris HOM05D001080 ORTHO05D001081 9.6e-06 54.3 37 67.6
BcaB06g27579 Brassica carinata HOM05D001080 ORTHO05D001081 9.6e-06 54.3 54 57.4
Carub.0005s0023 Capsella rubella HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 73.5
CAN.G22.32 Capsicum annuum HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 73.5
CAN.G555.2 Capsicum annuum HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 73.5
CDE02G0497 Ceratophyllum demersum HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 70.6
Migut.I01180 Erythranthe guttata HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 73.5
MD09G1160400 Malus domestica HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 70.6
MD17G1146200 Malus domestica HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 70.6
SMO139G0043 Selaginella moellendorffii HOM05D001080 ORTHO05D001081 9.6e-06 54.3 34 70.6


User provided reference genes

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