Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.4e-173 612.1 311 100.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.6e-172 609.4 310 99.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.2e-117 425.6 298 71.8
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.6e-113 413.3 297 69.0
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 5.9e-111 404.8 298 69.1
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.0e-107 392.5 299 66.2
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 9.7e-106 387.5 293 67.9
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 4.2e-101 372.1 300 64.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 9.4e-101 370.9 285 66.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.0e-99 367.5 295 62.4
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.3e-99 366.3 265 68.7
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.1e-99 365.2 301 61.8
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.5e-98 363.6 276 67.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.5e-98 363.6 282 64.9
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.2e-97 357.8 287 63.4
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.1e-96 355.9 259 67.2
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.1e-96 355.9 302 61.3
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 4.1e-96 355.5 259 65.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 9.1e-96 354.4 264 64.8
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 9.1e-96 354.4 303 59.7
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.2e-95 354.0 259 67.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.5e-95 353.6 282 63.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 5.9e-95 351.7 296 61.1
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.0e-94 350.9 316 58.9
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.3e-94 350.5 263 66.5
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-94 350.5 327 56.9
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.7e-94 350.1 312 57.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.8e-94 349.0 293 61.8
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.0e-94 348.6 296 60.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.0e-94 348.6 261 65.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 6.5e-94 348.2 282 62.4
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.5e-93 346.3 290 60.7
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.2e-93 345.9 266 65.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 4.2e-93 345.5 269 63.9
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 9.4e-93 344.4 280 62.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 9.4e-93 344.4 267 64.4
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.2e-92 344.0 259 66.4
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 8.0e-92 341.3 295 58.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.4e-91 340.5 292 59.9
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.1e-90 337.4 258 64.3
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.3e-90 335.9 309 56.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 4.4e-90 335.5 287 58.9
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.4e-90 335.5 261 63.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.7e-90 335.1 280 61.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 5.7e-90 335.1 275 59.6
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 9.7e-90 334.3 295 57.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.3e-89 334.0 257 65.0
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.7e-89 333.6 270 62.6
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.2e-89 333.2 303 58.1
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 3.7e-89 332.4 244 67.6
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 4.8e-89 332.0 287 58.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 8.2e-89 331.3 304 57.9
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.4e-88 330.5 274 59.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.8e-88 330.1 275 59.6
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-88 330.1 255 63.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.1e-88 329.3 226 69.0
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.1e-88 329.3 260 63.8
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.3e-88 328.6 251 65.7
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.3e-88 328.6 302 55.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.6e-87 327.0 275 58.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.6e-87 327.0 276 59.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.6e-87 327.0 302 55.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-87 326.6 260 64.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.0e-87 326.6 253 63.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.6e-87 326.2 288 58.0
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 5.9e-87 325.1 257 62.6
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.9e-87 325.1 224 70.1
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 7.7e-87 324.7 255 63.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.0e-86 324.3 258 60.5
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.0e-86 324.3 266 63.9
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-86 323.9 293 58.4
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.7e-86 323.6 293 58.4
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 2.2e-86 323.2 258 59.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.2e-86 323.2 268 61.2
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-86 323.2 285 58.2
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.9e-86 322.8 303 54.8
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.9e-86 322.8 274 57.3
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.9e-86 322.8 258 59.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.9e-86 322.8 257 61.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.0e-86 322.0 293 58.4
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.0e-86 322.0 263 59.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.5e-86 321.6 266 58.6
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 8.5e-86 321.2 261 60.2
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 8.5e-86 321.2 261 60.2
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 8.5e-86 321.2 272 57.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 8.5e-86 321.2 262 59.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.1e-85 320.9 297 56.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.1e-85 320.9 271 60.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.5e-85 320.5 286 56.3
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.9e-85 320.1 275 57.5
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.9e-85 320.1 310 55.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.5e-85 319.7 279 57.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.2e-85 319.3 257 61.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 5.5e-85 318.5 331 54.1
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 7.2e-85 318.2 260 60.0
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 9.4e-85 317.8 260 60.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.4e-85 317.8 259 61.8
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 9.4e-85 317.8 361 50.7
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-84 316.6 223 68.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.7e-84 316.2 246 64.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 6.1e-84 315.1 286 55.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.0e-83 314.3 277 56.3
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.4e-83 313.9 253 63.2
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-83 313.2 277 59.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 3.0e-83 312.8 260 59.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 8.8e-83 311.2 302 54.0
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-82 310.8 282 54.6
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.3e-81 307.4 300 54.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.7e-81 305.8 315 49.5
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 8.3e-81 304.7 351 48.4
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.4e-80 303.1 304 51.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.3e-80 302.0 293 54.9
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.1e-80 301.2 261 55.9
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.9e-79 298.5 240 60.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-78 297.4 270 58.1
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-78 296.6 270 57.4
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-78 296.6 218 66.1
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.9e-78 296.2 285 55.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 8.5e-78 294.7 241 58.5
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.2e-77 292.7 270 57.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.3e-75 286.6 201 65.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.8e-72 276.9 277 55.6
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.0e-72 275.0 186 70.4
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.3e-70 270.0 247 54.3
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 4.4e-66 255.8 242 57.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 5.7e-66 255.4 175 70.9
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.0e-58 230.3 240 47.9
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.7e-57 226.1 189 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.1e-56 224.6 251 48.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.4e-56 224.2 154 70.1
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.4e-56 222.2 247 45.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-53 214.5 240 48.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.5e-53 214.2 287 47.0
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.4e-48 196.8 262 42.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-47 194.5 150 66.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.1e-46 189.1 125 73.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 5.6e-45 185.7 176 52.3
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.6e-44 184.1 130 71.5
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 3.4e-42 176.4 189 47.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 8.3e-41 171.8 147 61.2
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 5.4e-40 169.1 147 59.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 9.2e-40 168.3 82 100.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.7e-39 166.8 126 67.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-37 160.6 271 37.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 7.3e-37 158.7 246 39.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 9.9e-34 148.3 155 51.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 5.4e-32 142.5 106 62.3
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.0e-31 139.0 117 61.5
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 6.2e-28 129.0 102 65.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.3e-25 121.3 251 35.1
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-23 114.0 163 42.3
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 2.3e-22 110.5 203 35.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 7.3e-21 105.5 93 53.8
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 9.6e-21 105.1 78 53.8
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 2.8e-20 103.6 90 60.0
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-19 100.9 55 78.2
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.5e-18 97.8 80 61.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 3.2e-16 90.1 109 44.0
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 3.2e-16 90.1 109 44.0
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 7.1e-16 89.0 84 53.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 7.1e-16 89.0 212 30.2
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 6.0e-15 85.9 110 44.5
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 9.0e-11 72.0 66 51.5
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 3.4e-10 70.1 48 68.8
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.3e-06 58.2 66 50.0


User provided reference genes

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