Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 0.0e+00 1730.7 913 100.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 0.0e+00 1279.6 912 76.3
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.3e-277 958.0 912 61.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.9e-274 949.5 920 60.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 5.3e-269 931.4 917 59.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 6.5e-267 924.5 997 55.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.5e-218 763.1 880 50.5
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.0e-204 716.8 849 50.2
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.7e-203 713.8 936 48.5
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.1e-202 711.1 923 49.3
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.9e-197 693.7 929 48.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.2e-197 691.4 929 48.5
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.0e-191 673.7 933 46.9
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.3e-190 671.0 942 46.0
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.3e-190 668.3 900 47.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.5e-188 662.9 897 48.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 6.0e-188 662.1 933 46.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 7.3e-186 655.2 935 46.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-184 651.4 887 47.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-184 651.0 928 45.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.4e-184 651.0 894 47.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.8e-184 650.6 928 45.2
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 4.0e-184 649.4 883 46.8
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-183 647.1 927 45.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.4e-183 646.0 905 45.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.9e-182 643.3 931 45.2
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 8.4e-182 641.7 883 46.4
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.1e-181 641.3 920 47.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 7.1e-181 638.6 935 45.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.0e-180 635.6 894 46.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.0e-180 635.6 898 46.8
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-179 634.0 924 44.9
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.6e-179 632.1 929 45.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.5e-178 630.2 887 46.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.8e-177 626.7 1002 42.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.2e-177 625.5 923 43.4
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 8.1e-177 625.2 1014 42.4
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.1e-176 624.8 954 44.5
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 6.9e-176 622.1 956 44.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 7.6e-175 618.6 898 43.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 9.9e-175 618.2 903 45.5
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.2e-174 617.1 870 46.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.9e-174 616.7 678 55.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.8e-174 616.3 927 45.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-173 614.8 888 46.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-173 613.6 914 44.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.2e-173 613.2 948 44.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.2e-173 613.2 890 46.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-172 611.3 928 44.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-172 610.9 904 43.7
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.7e-172 610.1 950 43.9
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.0e-172 609.0 899 43.9
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.0e-171 608.2 927 44.4
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.7e-171 607.4 935 43.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.3e-171 607.1 924 43.1
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-170 603.6 846 44.6
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.5e-170 603.6 915 45.1
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.3e-170 603.2 897 44.4
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.6e-170 602.4 949 45.1
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.3e-169 601.3 930 44.0
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.3e-169 601.3 906 44.2
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.6e-169 599.7 855 44.6
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 8.1e-169 598.6 911 45.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 8.1e-169 598.6 888 45.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.4e-168 597.8 927 43.9
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.1e-168 596.7 926 44.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 3.1e-168 596.7 886 44.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 6.9e-168 595.5 883 45.3
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.6e-167 592.0 848 44.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-166 590.9 907 43.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.2e-166 590.5 886 44.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.2e-166 590.5 890 44.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-165 586.3 848 44.2
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.5e-164 583.2 894 44.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.6e-164 582.8 888 44.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.9e-164 582.0 884 45.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.9e-163 579.7 908 43.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.9e-162 577.4 938 43.9
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.9e-162 577.4 935 43.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.3e-162 576.2 878 45.3
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.1e-161 573.9 885 44.0
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 4.8e-161 572.8 928 43.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.2e-159 568.2 926 42.2
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.5e-159 567.8 901 44.2
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 7.6e-159 565.5 879 44.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.9e-158 563.5 890 43.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-157 561.6 776 47.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 6.0e-156 555.8 911 42.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 5.1e-155 552.7 920 42.7
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 5.1e-155 552.7 880 43.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 8.7e-155 552.0 888 43.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.8e-152 544.3 872 41.2
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 3.8e-150 536.6 894 44.3
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 8.4e-150 535.4 917 42.3
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 7.1e-149 532.3 879 44.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 9.3e-149 531.9 941 42.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.7e-148 530.4 822 42.1
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 6.0e-148 529.3 1008 39.7
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.9e-148 528.9 912 41.2
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 7.9e-148 528.9 840 43.0
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.1e-147 526.2 674 50.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.7e-145 520.0 943 40.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-138 498.0 830 42.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.1e-136 490.0 832 41.3
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.9e-136 489.2 889 40.0
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 9.1e-136 488.8 858 42.2
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.7e-132 477.2 844 40.2
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.6e-132 476.9 965 38.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 7.9e-132 475.7 841 40.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.0e-131 473.8 912 39.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 6.7e-131 472.6 903 39.6
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.1e-130 471.9 595 49.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.2e-129 467.6 666 45.8
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.8e-128 464.5 925 40.4
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.4e-128 464.2 886 40.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.2e-127 461.8 847 40.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.6e-127 460.7 855 39.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.2e-125 453.8 936 39.5
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 5.2e-123 446.4 815 39.8
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-122 445.3 900 38.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 6.3e-121 439.5 893 38.9
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 6.3e-121 439.5 894 38.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.4e-120 438.3 687 43.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.8e-120 438.0 898 38.5
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 4.1e-120 436.8 916 38.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 5.3e-120 436.4 916 38.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 9.1e-120 435.6 903 39.1
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 9.1e-120 435.6 898 38.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-119 435.3 850 38.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.6e-119 434.9 898 37.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.6e-119 434.9 898 37.6
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.2e-117 426.8 809 38.6
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.4e-114 416.8 787 40.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.8e-113 414.1 868 38.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-109 401.7 680 41.8
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.3e-107 394.4 995 34.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.8e-106 389.0 856 38.1
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 6.1e-100 369.8 455 49.9
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.3e-97 362.1 818 35.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-97 361.7 623 41.7
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.9e-95 353.2 777 36.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.6e-90 337.8 527 43.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.7e-86 325.1 885 34.1
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.9e-86 323.9 508 43.3
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.1e-79 301.6 551 43.0
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-77 294.7 414 48.6
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 4.3e-77 293.9 994 30.4
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.5e-74 283.1 422 44.8
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.3e-73 279.6 867 31.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.4e-67 262.3 906 30.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-65 254.6 886 30.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 5.4e-64 250.4 385 43.4
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 4.3e-61 240.7 696 31.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.5e-55 221.1 325 43.7
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.8e-52 210.7 347 42.9
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 5.3e-51 207.2 283 42.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 3.8e-49 201.1 420 38.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.3e-46 192.6 281 45.9
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.3e-45 188.0 326 40.5
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.9e-40 172.2 579 29.2
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-39 169.1 272 42.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 3.9e-38 164.5 127 59.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 7.4e-37 160.2 461 29.5
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.0e-33 147.5 262 38.9
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-28 132.5 220 38.6
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.5e-26 125.9 95 58.9
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.9e-25 121.7 138 45.7
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-25 121.3 253 36.4
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 3.8e-25 121.3 121 52.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.1e-22 110.9 235 37.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.2e-18 99.8 132 40.2
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 4.5e-18 97.8 173 39.3
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-14 86.3 100 62.0
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.3e-12 77.4 44 77.3
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-10 72.4 67 53.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-08 66.2 114 41.2
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.5e-08 65.5 119 38.7
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.6e-07 62.8 104 31.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.1e-07 60.8 87 41.4
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 4.0e-06 58.2 102 38.2


User provided reference genes

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