Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 0.0e+00 1162.5 594 100.0
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.8e-189 664.5 618 59.4
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 5.1e-180 635.2 528 64.6
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 5.5e-158 562.0 521 58.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.4e-147 525.8 626 50.0
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.5e-142 510.0 580 51.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.6e-141 506.1 616 49.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 3.0e-140 503.1 524 53.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 6.7e-140 501.9 526 54.8
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 6.7e-140 501.9 586 50.2
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.3e-138 497.7 582 50.9
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.7e-138 496.1 560 51.4
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.4e-137 494.2 596 48.8
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.2e-133 481.1 578 50.7
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 8.0e-133 478.4 625 46.2
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.3e-132 476.9 595 46.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.2e-131 474.6 588 48.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.7e-130 470.7 578 48.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 3.7e-130 469.5 588 48.1
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.2e-130 468.4 577 48.4
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.2e-128 464.5 498 51.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.5e-128 462.6 576 48.1
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 5.9e-128 462.2 578 48.4
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 7.7e-128 461.8 585 48.0
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.3e-127 461.1 585 46.5
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 6.5e-127 458.8 581 47.0
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.9e-126 457.2 569 47.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.2e-126 456.4 597 45.7
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.2e-125 454.5 538 48.5
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.1e-125 453.8 546 50.4
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.8e-122 443.4 599 46.7
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.8e-121 440.7 576 46.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.4e-121 440.3 612 45.1
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 5.4e-121 439.1 589 45.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.2e-120 438.0 539 47.7
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.2e-120 438.0 540 47.0
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 4.5e-120 436.0 587 47.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.5e-120 436.0 568 46.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.3e-119 433.7 514 48.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.3e-119 433.7 514 48.6
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.3e-119 433.7 574 45.1
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 5.0e-119 432.6 539 48.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.5e-119 432.2 642 43.3
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.2e-117 427.9 559 46.3
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.3e-116 423.7 501 48.5
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.4e-115 419.9 491 48.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 7.5e-115 418.7 622 41.2
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 7.5e-115 418.7 546 45.1
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 9.8e-115 418.3 558 43.4
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.3e-114 417.9 559 43.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 8.3e-114 415.2 508 47.4
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-112 411.0 451 51.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.6e-112 411.0 502 48.4
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.5e-112 409.5 547 45.3
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.0e-111 408.3 579 43.4
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.3e-111 407.1 567 44.6
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 8.6e-111 405.2 523 45.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.1e-110 404.8 486 47.9
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-110 404.4 579 43.0
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.9e-110 404.1 540 44.6
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.1e-109 400.6 560 42.3
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.8e-109 400.2 569 42.9
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.7e-109 399.4 445 50.8
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.4e-108 397.9 614 41.7
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.5e-107 394.4 506 44.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.2e-104 384.8 432 49.8
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.7e-104 383.6 591 42.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.6e-104 382.9 545 42.4
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 5.0e-103 379.4 433 51.3
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.6e-103 379.0 442 48.4
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 5.6e-102 375.9 447 47.2
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.8e-101 373.6 578 39.6
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.8e-101 373.6 489 45.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 4.7e-101 372.9 549 42.3
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-100 370.5 241 71.8
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 6.8e-100 369.0 505 43.4
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.4e-99 366.3 448 46.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 5.8e-99 365.9 558 41.9
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 6.4e-98 362.5 506 44.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.4e-97 361.3 481 43.7
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.1e-97 359.8 618 39.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-96 358.2 501 41.9
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.7e-96 357.1 619 38.9
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 6.0e-96 355.9 501 45.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-95 355.1 573 40.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.6e-95 352.1 493 45.6
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.5e-94 350.5 513 41.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 5.6e-94 349.4 538 40.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 7.3e-94 349.0 485 40.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.6e-93 347.8 485 40.8
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.6e-93 347.8 485 40.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.8e-93 347.1 558 38.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 6.2e-93 345.9 521 42.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 8.1e-93 345.5 557 38.4
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-92 345.1 488 42.2
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.8e-92 344.4 486 42.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.3e-92 344.0 334 54.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 7.5e-91 339.0 477 42.3
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.2e-89 332.0 557 37.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.2e-88 331.6 494 41.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.6e-88 329.7 569 37.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.6e-85 320.1 529 39.5
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.2e-85 319.3 400 47.5
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.9e-82 310.5 534 36.9
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.9e-81 307.8 496 40.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.4e-81 307.4 509 37.5
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.6e-80 303.1 586 35.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.4e-75 287.0 500 36.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-70 271.9 408 45.3
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 4.6e-64 250.0 410 41.5
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.0e-60 235.7 562 33.1
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.2e-58 231.1 399 41.1
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-57 228.4 302 47.7
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 4.2e-57 226.9 173 63.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.1e-56 224.6 338 42.9
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.7e-53 213.8 166 62.7
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.9e-52 209.5 380 37.6
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.2e-51 208.8 131 82.4
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.3e-45 186.4 233 43.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.0e-43 181.4 318 37.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 5.9e-43 179.9 243 39.9
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.4e-41 175.3 386 33.9
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.6e-40 171.8 140 60.7
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 7.9e-40 169.5 385 34.5
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.9e-36 156.4 334 31.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-35 155.6 337 32.3
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 6.5e-34 149.8 231 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.9e-33 148.3 344 31.1
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.0e-30 138.3 211 37.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-28 131.7 282 31.9
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-23 115.2 96 53.1
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-23 115.2 96 53.1
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 3.9e-23 114.0 309 27.5
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.7e-22 110.2 100 57.0
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.7e-22 109.4 164 40.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-21 107.5 308 26.9
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-16 92.4 118 51.7
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.7e-16 91.3 258 26.7
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 6.1e-08 63.5 128 35.9
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 6.1e-08 63.5 128 35.9
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 6.1e-08 63.5 128 35.9
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.8e-07 60.1 128 35.2
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.8e-07 60.1 128 35.2


User provided reference genes

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